BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492669 Length=621 Score E Sequences producing significant alignments: (Bits) Value AT4G22000.1 | Symbols: | unknown protein; Has 30201 Blast hits... 776 0.0 > AT4G22000.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11659638-11660906 REVERSE LENGTH=692 Length=692 Score = 776 bits (420), Expect = 0.0 Identities = 569/635 (90%), Gaps = 34/635 (5%) Strand=Plus/Plus Query 1 CGCGTTCTCAAAGTTGCTCTCACAATCAAAAGCTTCTCCGATCTCCAATCATATAAGTTA 60 |||||||||||||||||||| | | | || ||||||||||||||| ||||||||| Sbjct 78 CGCGTTCTCAAAGTTGCTCT--C-A-C---AG--TCTCCGATCTCCAATTTTATAAGTTA 128 Query 61 TGGCTGGGAAAGCTGCAGAAGCTGTGGCGAAGACAGTGACGGGGTTTCAATATCCATGGA 120 ||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| Sbjct 129 TGGCTGGAAAAGCTGCAGAAGCTGTGGCAAAGACAGTGACAGGGTTTCAACATCCATGGA 188 Query 121 GGGCGAAACTCGATAAGTACAGAACCGAGCTGACAAAAGGCGTGTGGGGTTATTGGGAGA 180 ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct 189 GGGCGAAACTCGATAAGTACAGAACCGAGTTGACGAAAGGTGTGTGGGGTTATTGGGAGA 248 Query 181 TGGGAGCATGGAAACCGTTAGGGATAAGTGCACGAAGGAGGGCGATGCTGAGGAAAGAAG 240 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 249 TGGGAGCATGGAAACCGTTAGGGATAAGTGCACGAAGGAGGGCTATGCTGAGGAAAGAAG 308 Query 241 TGTTGACTAATGGAGAAGACTGGCCTTATGATCCAGAGAGGAAAGCTATGAGGACAAAGA 300 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 309 TGTTGACTAATGGAGAAGATTGGCCTTATGATCCAGAGAGGAAAGCTATGAGGACAAAGA 368 Query 301 GGAAAGGGCATAAATGCGATAGGATTTCGGCTGAGAAAAGAGAGAACACTGCGAAACTTA 360 |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 369 GGAAAGGGCATAAATGTGATAGAATTTCAGCTGAGAAAAGAGAGAACACTGCGAAGCTTA 428 Query 361 TGCTGAAGATGCCTCAGATGCTGCTTGATTACaagaagagaaggtgggagaagaagatga 420 || ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| Sbjct 429 TGTTGAAGATGCCTCAGATGTTGCTTGATTATAAGAAGAGAAGGTGGGAAAAGAAGATGA 488 Query 421 aggaagaagagaaagctaaagaagaCAAGTAATTGATTTGTTGAGATCATTGATGAATAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct 489 AGGAAGAAGAGAAAGCTAAAGAAGACAAGTAATTGATTTGTTGAGATCAT-GATTACTA- 546 Query 481 TA-ATCATTTAGTTTGTTGA-TCTCA-TGAA---A-TCTG--GAT-TT-TGAAATCTTGG 529 || | | || ||| | ||| | | | || | | || ||| || ||||||||||| Sbjct 547 TAGA-C-TTG-GTT-GATGAATAAGAAT-AATTTAGTTTGTTGATCTTATGAAATCTTGG 601 Query 530 --G-TTTAAGAGCTCAAGTTTGCTTCTGATATGCttttgtatgatgtttttttgtttatg 586 | ||||||| | |||||||||||||||||| |||||||||||||||||||| ||| Sbjct 602 AAGGTTTAAGATCACAAGTTTGCTTCTGATATACTTTTGTATGATGTTTTTTT----ATG 657 Query 587 tttgtttttAACAGAACCCAAACGTGGTTGTGGTT 621 |||||||||||||||||||||| ||| |||||||| Sbjct 658 TTTGTTTTTAACAGAACCCAAAAGTGTTTGTGGTT 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29939551612 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5