BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492673 Length=1530 Score E Sequences producing significant alignments: (Bits) Value AT4G21960.1 | Symbols: PRXR1 | Peroxidase superfamily protein |... 2359 0.0 > AT4G21960.1 | Symbols: PRXR1 | Peroxidase superfamily protein | chr4:11646174-11648462 REVERSE LENGTH=1582 Length=1582 Score = 2359 bits (1277), Expect = 0.0 Identities = 1457/1540 (95%), Gaps = 27/1540 (2%) Strand=Plus/Plus Query 3 AAAATAAAAATAAAGAAAACTCCATTTTCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 62 |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 41 AAAA-ATAAATAAAGAAAACTCCATTTCCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 99 Query 63 CTGACTCAACTCAAGA---GTG-A---AGA-AAGAAAGAGACaaaaaaaaaaTGGGAGGC 114 |||||||||||||||| ||| | ||| |||||||| | | |||||||||||||||| Sbjct 100 CTGACTCAACTCAAGAGTGGTGTAGTGAGAGAAGAAAGATAGAGAAAAAAAATGGGAGGC 159 Query 115 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 160 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 219 Query 175 GTAACAGAGGCGGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCT 234 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 GTAACAGAGGCTGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCC 279 Query 235 GAAGATATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 294 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 GAAGACATCGTCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 339 Query 295 TCTTGGCTCCGTAACATCTTCCACGACTGCGCCGTCGAGTCGTGTGATGCGTCGCTTTTG 354 ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 340 TCTTGGCTCCGTAACATCTTCCATGACTGCGCCGTTGAGTCATGTGATGCGTCGCTTTTG 399 Query 355 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACATGACAGGAGCTTCGGACTGAGA 414 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 400 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACACGACAGGAGCTTCGGACTTAGA 459 Query 415 AACTTCAGGTACATCGAGGAGATCAAGGAAGCTCTTGAGAGGGAGTGTCCTGGTGTTGTC 474 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 460 AACTTTAGGTACATCGAGGAGATCAAGGAAGCTCTCGAGAGGGAGTGTCCTGGTGTTGTC 519 Query 475 TCATGTTCCGACATTCTCGTCTTGTCGGCAAGAGAAGGAATCGAAGCAGTGGGAGGACCA 534 |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 520 TCATGTTCTGACATTCTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTAGGAGGACCT 579 Query 535 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACCGATATGCTTGAG 594 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 580 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACGGATATGCTCGAG 639 Query 595 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGACAAGTTCAAATCCATC 654 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 640 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAAAAGTTCAAATCCATC 699 Query 655 GGAATCGACACTCCCGGCCTCGTTGCTCTCCTAGGGTCACACAGCGTGGGAAGAACTCAT 714 || |||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 700 GGTATCGACACTCCCGGCCTCGTCGCCCTCCTAGGGTCACACAGCGTGGGAAGAACTCAC 759 Query 715 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGATCCGTCCTTGAACCCGGACCAC 774 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 760 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGACCCGTCCTTAAACCCGGACCAC 819 Query 775 GTCCCTCACATGCTACACAAGTGTCCTGACTCTATCCCTGACCCAAAGGCGGTCCAGTAC 834 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 820 GTCCCTCACATGCTACACAAGTGTCCTGACTCGATCCCTGACCCAAAGGCGGTCCAGTAC 879 Query 835 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 880 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 939 Query 895 GACAACAAGGGTTTGCTTCTTGTGGACCATCAGCTCGCACACGACAAAAGAACTAGACCA 954 ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 940 GACAACAAGGGTTTGCTCCTTGTGGACCATCAGCTCGCACACGACAAACGAACCAGACCA 999 Query 955 ATTGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1014 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 ATCGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1059 Query 1015 CAGATCTTATCCGAGAACAACCCTTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGC 1074 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1060 CAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGT 1119 Query 1075 AATCTTGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGGCAGAGGCTCTGGTGT 1134 ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1120 AATCTCGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGACAGGGGCTCTGGTGT 1179 Query 1135 GTTGGGATCTCTGCTTGGTACGAACTAAGATGAATaaaaaaaaTCTTTTAAGTTAAATCA 1194 |||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1180 GTTGAGTTCTCTGCTTGGTACGAACCAAGATGAATAAAAAAA-TCTTTTAAGTTAAATCA 1238 Query 1195 AAGAAAGGGTGATGATGAATGCATCATGGTGGTGACCACATCCTTCTTTTGTGTGTTCTT 1254 |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| Sbjct 1239 AAGAAAGGGTGATGATGAATACATCATGGTAGTGACCACCTCCTTCTTTTGTGTGTTC-- 1296 Query 1255 GTTGCAGCCTTAATGCTTTAATTATGATGTTTAGTGGCTTTGAGTTATTTAATCTAAATG 1314 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1297 -----AGCCTTAATGCTTTAATTATGATGTT-AGTGGCTTTGAGTTATTTAATCTAAATG 1350 Query 1315 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGATGAGATAATGATAATGGAAAGGATG 1374 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1351 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGGTGATATAATGATAATGGAAAGGATG 1410 Query 1375 TATGATATGATGGATGGTGTTTGGGTA--ATTGTATGACGATGTAATAATAAGTAAACA- 1431 ||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||| Sbjct 1411 TATGATATGATGGATGGTGTT-GGGTATCAT-GTATGACGATGTAATGATAAGTAAACAT 1468 Query 1432 GTCGGAATCTTTTCTATAACTTGTTCAACATGCATGATATATATATAAGTACTGTGTTTG 1491 ||| ||||||||| |||| |||||||||||||||| |||| ||| | ||||||||| || Sbjct 1469 GTCCGAATCTTTTG-ATAATTTGTTCAACATGCATGGTATACATA-A-GTACTGTGTATG 1525 Query 1492 G-TGATATCGATCTATTTTACTGATCTCACTAAAGATTTT 1530 | |||||||||||||||||||||||||||| ||||||||| Sbjct 1526 GGTGATATCGATCTATTTTACTGATCTCACCAAAGATTTT 1565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75501619680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5