BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492738
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:... 1170 0.0
AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:... 505 5e-142
AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondr... 63.9 4e-09
> AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:11425957-11428386
FORWARD LENGTH=1385
Length=1385
Score = 1170 bits (633), Expect = 0.0
Identities = 713/751 (95%), Gaps = 8/751 (1%)
Strand=Plus/Plus
Query 514 ATGAGCCTGGGAAGCAAGTAAGGAGCGCTATTAAGATTAAAAATACCAGCAAATCACATG 573
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654
Query 574 TAGCCTTCAAGTTTCAAACAACTGCACCGAAGAGTTGCTTCATGCGTCCACCTGGTGCTA 633
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714
Query 634 TTCTTGCTCCTGGAGAGACTATTATTGCTACTGTGTTCAAATTTGTTGAGCCTCCTGAGA 693
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 TTCTTGCTCCTGGAGAGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAGA 774
Query 694 ATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTTAAATTTAAAATCATGAGCCTGAAAG 753
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 775 ATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAGG 834
Query 754 TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTTGATGAGCAAAAGGATGATGTGTCTA 813
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 835 TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTCTA 894
Query 814 AAGAGCAAATATTGCGTGTGATTTTCCTGGATCCCGAGCGCCCCAACCCTGCGCTGGACA 873
| |||||||||||||||||||||||| ||||||| |||||| |||||||||| |||| |
Sbjct 895 AGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCCAACCCTGCATTGGAAA 954
Query 874 AACTGAAGCGCCAGTTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAG 933
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AACTGAAGCGTCAATTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAG 1014
Query 934 AGGAAACAGGTCCAAAGATCATTGGAGAAGGGCTTGTGATCGATGAATGGAAGGAGCGTC 993
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGGAAACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGGAAGGAGCGTA 1074
Query 994 GAGAGAGATATCTTGCACAGCAACAAGGCGAAGGAGCTGACTCTGTCTGAGAGACTAAAA 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GAGAGAGATATCTTGCACAGCAACAAGGCGAAGGAGCTGACTCTGTCTGAGAGACTAAAA 1134
Query 1054 GAGTTTTCTCAGGACAAAAACTAGTGTGCTTGTgaagaagaagaagaagaagagaCCGCG 1113
||||||||||||||||||||| |||| ||||||||||| |||||||||| | ||||||
Sbjct 1135 GAGTTTTCTCAGGACAAAAACAAGTGCGCTTGTGAAGATGAAGAAGAAG--G-GACCGCT 1191
Query 1114 ATATTGAATTTATATGCTAACTTCTAGATTCATAATGCAATCTA-A-GGATCATGTTGGT 1171
||||||||||||||||||||||||||||||||| ||||||| || | |||||||| ||||
Sbjct 1192 ATATTGAATTTATATGCTAACTTCTAGATTCATGATGCAATATATAAGGATCATGCTGGT 1251
Query 1172 aaaaaaaaaaGACAATGAAG-AAACTTTT--CATGTAAAAAAGAAATGTAAACTTGGGTT 1228
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1252 AAAAAAAAAAGACAATGAAGGAAACTTTTTTCATGTAAAAAAGAAATGTAAACTTGGGTT 1311
Query 1229 TGATGATAATGAATTGTTCATGTTAAGTACT 1259
||||||||||||||||||||||||||| |||
Sbjct 1312 TGATGATAATGAATTGTTCATGTTAAGGACT 1342
Score = 710 bits (384), Expect = 0.0
Identities = 475/515 (92%), Gaps = 22/515 (4%)
Strand=Plus/Plus
Query 1 AACACGGACGCGAAATCAACCAATTAAATCCACTT-TCTCTCACCATCTCACGTCCGAtc 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 43 AACACGGACGCGAAATCAACCAATTAAATCCACTTCTCTCTCACCATCTCACGTCCGA-- 100
Query 60 tctctctctctctgagctctctTCACGAGTCAACCCC-TTCTCTGTCGCAATTCGCATGC 118
|||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||||||
Sbjct 101 TCTCTC-CTCTCTGAGCTCTCATCACGAGTCAACCCCTTTCTCCGTCGAAATTCGCATGC 159
Query 119 TTCACCTGTAAGAGAGAAGAAGATGACTATGACGGAGGAGAAACCAACTTCCGACGGCAA 178
|| | || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TTAAACTCT--GAGAGAAGAAGATGACTATGACGGAGGAGAAACCAACTTCCGACGGCAA 217
Query 179 AGGAGGTTGGGGTTTCTTCAAGATTCCATTTCGTAACTCAAGTGGTCACGGAAACGCCGC 238
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 218 AGGAGGTTGGGGTTTCTTCAAGATTCCATTTCGTAACTCAAGCGGTCACAGAAACGCCGC 277
Query 239 TTCAAGTGCTGCTACTTCTCCGTTTCCATCGGGTGCTTCGTCTTCTTCTACTTCTTCtca 298
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 278 TTCAAGTGCTGCTACTTCTCCGTTTCCATCTGGAGCTTCTTCTTCTTCTACTTCTTCTCA 337
Query 299 tatccataaccatcatcaacatcaacatcaacaacatcaccatcatcatcatcatcagca 358
| | |||||||||||||||||||| ||| ||| | ||||| | ||||||||
Sbjct 338 TCTACATAACCATCATCAACATCA---TCA------TCA--A-CATCA-C--CATCAGCA 382
Query 359 tcatcatcaGCTTGGTTATAACGGTCCTCATGGTGATGGATCGGGTCAAAATCAACACCC 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 383 CCATCATCAGCTTGGTTATAACGGTCCTCACGGTGATGGATCGGGTCAAAATCAACATCC 442
Query 419 GACTCCTTCTCCTTCAGTTTCTTCTGTTGCTAAGTCGTTTCTTCCTACTAAACGAAGATT 478
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 443 GACTCCTTCTCCTTCAGTTTCATCTGTTGCTAAGTCTTTTCTTCCTACTAAACGAAGATT 502
Query 479 GAAGCTTGATCCTTCTGAGAAACTCTATTTTCCTT 513
|||||||||||||||||||||||||||||||||||
Sbjct 503 GAAGCTTGATCCTTCTGAGAAACTCTATTTTCCTT 537
> AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:2590065-2592163
REVERSE LENGTH=1207
Length=1207
Score = 505 bits (273), Expect = 5e-142
Identities = 481/580 (83%), Gaps = 19/580 (3%)
Strand=Plus/Plus
Query 453 TCGTTTCTTCCTACTAAACGAAGATTGAAGCTTGATCCTTCTG-AGAAACTCTATTTTCC 511
||| ||||||| || ||||| |||| |||||||||||||| | | ||||| || || ||
Sbjct 437 TCGCTTCTTCCAACAAAACGCCGATTAAAGCTTGATCCTTCAGCA-AAACTTTACTTCCC 495
Query 512 TTATGAGCCTGGGAAGCAAGTAAGGAGCGCTATTAAGATTAAAAATACCAGCAAATCACA 571
||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||
Sbjct 496 TTATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACA 555
Query 572 TGTAGCCTTCAAGTTTCAAACAACTGCACCGAAGAGTTGCTTCATGCGTCCACCTGGTGC 631
|||||| || |||||||||||||| | ||| ||||||||||||||||| || |||||||
Sbjct 556 TGTAGCGTTTAAGTTTCAAACAACAGTACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGC 615
Query 632 TATTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTCAAATTTGTTGAGCCTCCTG 690
|||||||||||| || | ||| ||||| || ||||| ||||| ||||||||||||||||
Sbjct 616 TATTCTTGCTCCCGGGGAAGA-AATTATCGCAACTGTTTTCAAGTTTGTTGAGCCTCCTG 674
Query 691 AGAATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTTAAATTTAAAATCATGAGCCTGA 750
|||||||||| ||||||||||| |||| |||| | ||||| ||||||||||||||| ||
Sbjct 675 AGAATAATGAAAAGCCAATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCTTG- 733
Query 751 AAG-TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTTGATGAGCAAAAGGATGATGTG 809
||| |||||| ||||| |||||| |||||||||||||||| |||||||| ||| ||||
Sbjct 734 AAGATGAAAGTTCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTC 793
Query 810 TCTAAAGAGCAAATATTGCGTGTGATTTTCCTGGATCCCGAGCGCCCCAAC-CCTGCGCT 868
||| | |||||| || |||||||| | ||| |||||||||| ||| ||| || | |
Sbjct 794 TCTGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCC-ATGAT 852
Query 869 GGACAAACTGAAGCGCCAGTTAGCAGAAGCGGATGCAGC-GGTGGAGGCAC-GAAAGAAA 926
||| ||| ||||| | || || || ||||||||||| || | | || |||| |||| |||
Sbjct 853 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAA-AAA 910
Query 927 -CCTCCAGA-GG-A-AACAGGTCCAAAGATC-ATTGGAGAAGGGCTTGTGATCGATGAAT 981
| | |||| || | ||||||||| | ||||||||||||||||||||||||||||
Sbjct 911 GCAT-CAGAGGGTATTGTTGGTCCAAAG-CCAATTGGAGAAGGGCTTGTGATCGATGAAT 968
Query 982 GGAAGGAGCGTCGAGAGAGATATCTTGCACAGCAACAAGG 1021
||||| | || |||||||||||||||||||| ||||||||
Sbjct 969 GGAAGCAACGCCGAGAGAGATATCTTGCACAACAACAAGG 1008
> AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr4:11428510-11430732 FORWARD LENGTH=1610
Length=1610
Score = 63.9 bits (34), Expect = 4e-09
Identities = 87/109 (80%), Gaps = 18/109 (17%)
Strand=Plus/Plus
Query 1127 ATGCTAACTTCTAGATTCATAATGCAATCTAAGGATCATGTTGGTaaaaaaaaaaGACAA 1186
|||||||||||||||||||||||||||| | | || | |||||| | |||||
Sbjct 1513 ATGCTAACTTCTAGATTCATAATGCAAT----G--T--TG--G-TAAAAATA---GACAA 1558
Query 1187 TGAA-GAAACTTTT-CATGTAAAAAAGAA-ATGTAAACTTGGGTTTGAT 1232
|||| ||||||||| |||||| |||| || ||| ||||||||| |||||
Sbjct 1559 TGAATGAAACTTTTTCATGTATAAAA-AATATGGAAACTTGGGGTTGAT 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5