BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492755
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II sub... 1389 0.0
AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II su... 442 3e-123
> AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
QA | chr4:11334402-11335773 FORWARD LENGTH=905
Length=905
Score = 1389 bits (752), Expect = 0.0
Identities = 848/893 (95%), Gaps = 11/893 (1%)
Strand=Plus/Plus
Query 1 GCTTCAATTTTCGTCTTGAGAAAGAAAACAAAAAACAATGGCTTCGATGGGTGGATTACA 60
|||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||
Sbjct 12 GCTTCAATTTTCGTCTTGAGAAAG--AA-AAACAA-AATGGCTTCGATGGGTGGATTACA 67
Query 61 CGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCAATGGCTCGAGCCGTCTGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 68 CGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCAATGGCTCCAGCCGTCTGAA 127
Query 121 TGTCCCTGGAAGAGTGGCGGTGGCTCAAAGGTCTAGACTTGTGGTCAGAGCTCAGCAGGG 180
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 128 TGGCTCTGGAAGAGTGGCGGTGGCTCAAAGGTCTAGACTTGTCGTCAGAGCTCAGCAGAG 187
Query 181 TGAAGAGACTTCTCGTCGGTCTGTGATTGGGCTCGTGGCTGCTGGATTAGCCGGTGGCTC 240
||| ||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||
Sbjct 188 TGAGGAGACTTCTCGCCGGTCCGTGATTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTC 247
Query 241 GTTTGTTCAGGCTGTCCTCGCCGATGCTGTTCCGATCAAAGTTGGTCCTCCTCCACCTCC 300
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||
Sbjct 248 GTTTGTTCAGGCTGTCCTCGCCGATGCTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCC 307
Query 301 TTCCGGTGGCCTTCCAGCTGGGACAGAGAACTCAGACCAAGCAAGAGACTTTGAATTGGC 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 308 TTCCGGTGGCCTTCCAGCTGGGACAGATAACTCAGACCAAGCAAGAGACTTTGCATTGGC 367
Query 361 ATTGAAAGACAGGTTTTACTTACAGCCATTGCCACCAACAGAAGCTGCAGCTAGAGCCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 ATTGAAAGACAGGTTTTACTTACAGCCATTGCCACCAACAGAAGCTGCAGCTAGAGCCAA 427
Query 421 AGAATCTGCAAAGGATATCATAAATGTGAAGCCATTGATCGACAGGAAAGCTTGGCCATA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGAATCTGCAAAGGATATCATAAATGTGAAGCCATTGATCGACAGGAAAGCTTGGCCATA 487
Query 481 TGTTCAAAACGATCTCCGTTCCAAGGCTTCTTATCTTCGTTATGACCTTAACACAATCAT 540
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 488 TGTTCAAAACGATCTTCGTTCCAAGGCTTCTTATCTTCGTTATGATCTTAACACAATCAT 547
Query 541 TTCCTCCAAACCCAAGGACGAGAAGAAGTCCCTAAAGGAGCTCACCACCAAGCTCTTCGA 600
|||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct 548 TTCCTCCAAACCCAAGGATGAGAAGAAGTCACTCAAGGATCTCACCACCAAGCTCTTCGA 607
Query 601 TACCATCGACAATCTGGATTATGCGGCGAAGAAGAAGAGTCCTTCGCAGGCTGAGAAGTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TACCATCGACAATCTGGATTATGCGGCGAAGAAGAAGAGTCCTTCGCAGGCTGAGAAGTA 667
Query 661 CTATGCTGAGACAGTCTCTGCTTTGAACGAAGTTCTTGCCAAGCTTGGTTAAGCATTTTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CTATGCTGAGACAGTCTCTGCTTTGAACGAAGTTCTTGCCAAGCTTGGTTAAGCATTTTA 727
Query 721 ATT-CTGC-TTTTTCTTGTAAATTATTATCTCTTGATTTTTGTTTTCTGAGTACTTTAGA 778
||| |||| |||||||||||||||||||| ||||| |||||||| | |||||||||||||
Sbjct 728 ATTTCTGCATTTTTCTTGTAAATTATTAT-TCTTGGTTTTTGTTCT-TGAGTACTTTAGA 785
Query 779 CTCAAATTCGTGAATCTGAATTTATTTTTCACGTTTTCACCaaaaaaaTGGCAATTTCTT 838
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 786 CTCAAATTCGTGAATCTGAATTTATGTTTCACGTTTTCACCAAGTAA-TGGCAATTTCTT 844
Query 839 GAGTATGCATTAACTTT-TCTTGCATGGTGATTTAGCAAACAACATCATTAAG 890
|||||||| ||| |||| | ||||||||||||||||||||||||| ||| |||
Sbjct 845 GAGTATGCGTTAGCTTTGT-TTGCATGGTGATTTAGCAAACAACAACATAAAG 896
> AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
subunit Q-2 | chr4:2671822-2673243 REVERSE LENGTH=1037
Length=1037
Score = 442 bits (239), Expect = 3e-123
Identities = 550/695 (79%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 42 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCA 101
||||||||| ||| |||| || ||||||| ||| || ||||||||||| ||| ||||||
Sbjct 90 CTTCGATGGCTGGCTTACGTGGAGCATCTCAGGCTGTCCTTGAAGGAAGTTTACAGATCA 149
Query 102 ATGGCTCGAGCCGTCTGAATGTCCCTGGAAGAGTGGCGG-T-GG-CTCAAAGGTCTAGAC 158
| ||||| | |||| |||| | || |||||| ||| | || |||| || | |||
Sbjct 150 ACGGCTCAAACCGTTTGAACAT--CT-CAAGAGTCTCGGTTGGGTCTCAGAGAACCGGAC 206
Query 159 TTGTGGTCAGAGCTCAGCAG---G-GT--G-A--AGAGACTTCTCGTCGGTCTGTGATTG 209
||||| |||| ||||||||| | || | | ||| | | ||| ||||| |||||||
Sbjct 207 TTGTGATCAGGGCTCAGCAGAACGTGTCAGTACCAGAAAGTAGTCGCCGGTCAGTGATTG 266
Query 210 GGCTCGTGGCTGCTGGATTAGCCGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATGCTG 269
| |||||||| ||||| ||||||||||| || || ||| | ||||| ||||||| |||
Sbjct 267 GACTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAGCTA 326
Query 270 TTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCCTTCCAGCTGGGACAGAGA 329
||||||||||||||||| |||||||| |||||||||||||| | | |||| ||||| |
Sbjct 327 TTCCGATCAAAGTTGGTGGTCCTCCACTTCCTTCCGGTGGCC-T--ACCTGGAACAGATA 383
Query 330 ACTCAGACCAAGCAAGAGACTTTGAATTGGCATTGAAAGACAGGTTTTACTTACAGCCAT 389
||||||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||
Sbjct 384 ACTCAGACCAAGCAAGAGACTTTTCATTGGCATTGAAAGATAGATTTTACATACAACCAT 443
Query 390 TGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAATGTG 448
|| ||||||||||||||||||||||||||||||| ||||| |||| | ||||| || ||
Sbjct 444 TGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGATTCTGCTAAAG-AGATCATCAACGTT 502
Query 449 AAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTCCGTTCCAAG-GC 507
||| |||| ||||||| ||||||||||| |||||||| ||||||||||||| ||| ||
Sbjct 503 AAGTCATTTATCGACAAAAAAGCTTGGCCCTATGTTCAGAACGATCTCCGTTT-AAGAGC 561
Query 508 TTCTTATCTTCGTTATGACCTTAACACAATCATTTCCTCCAAACCCAAGGACGAGAAG-A 566
|| || || ||||| || || ||||| | || ||| | || || ||||| |||||| |
Sbjct 562 ATCGTACCTCCGTTACGATCTCAACACCGTTATCTCCGCTAAGCCTAAGGAAGAGAAGCA 621
Query 567 A-GTCCCTAAAGGAGCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTATGC 624
| | || ||||| | |||||| | ||||| ||| | ||||| ||||| || ||| |||||
Sbjct 622 AAG-CCTTAAAG-ATCTCACCGCAAAGCTTTTCCAAACCATTGACAA-CTTGGACTATGC 678
Query 625 GGCGAAGAAGAA-GAGTC-CTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 679
||||| || || |||| | | ||| ||||||||||| || | | || || |||||
Sbjct 679 GGCGA-GATCAAAGAGTAGC--C-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTCG 733
Query 680 -GCTTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 712
| ||||||| || |||||||||||||| ||||||
Sbjct 734 AG-TTTGAAC-AATGTTCTTGCCAAGCTCGGTTAA 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5