BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492762 Length=1391 Score E Sequences producing significant alignments: (Bits) Value AT4G21210.1 | Symbols: ATRP1, RP1 | PPDK regulatory protein | c... 2200 0.0 > AT4G21210.1 | Symbols: ATRP1, RP1 | PPDK regulatory protein | chr4:11306945-11308742 FORWARD LENGTH=1424 Length=1424 Score = 2200 bits (1191), Expect = 0.0 Identities = 1330/1397 (95%), Gaps = 9/1397 (1%) Strand=Plus/Plus Query 1 aaaaaaacaaaaagaaagaa-aaagaaaTGGCTTTTCTTTCGGCGATGAAGTTGCAGGGA 59 ||||||| ||||| |||||| |||||||||||||| || ||||||||||||||||||||| Sbjct 31 AAAAAAAAAAAAAAAAAGAATAAAGAAATGGCTTTGCTCTCGGCGATGAAGTTGCAGGGA 90 Query 60 CGTCCACCATCGATCTCATCCAATCTCAACCCAAATTCCAAACCTGCAGGTTCGGATTCC 119 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 91 CGTCCACCACCGATCTCGTCCAATCTCAACCCAAATTCCAAACCTGCAGGTTCGGATTCC 150 Query 120 GTTTCCTTAAACACCTCTGAACCTGGCTCCGAACGGAAGCCTCGAAAATTCAGCTCACAG 179 |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 151 GTTTCCTTAAACGCCTCCGAACCTGGCTCCGAACGGAAGCCTCGGAAATTCAGCTCACAG 210 Query 180 CTAAACCGCTGGAACAGAGCAAGAACCTTAAAATCCGGCGCGAAGCTAGACCGTACGATT 239 ||||||||||||||||||||| ||||||||| || ||||||||||| ||| |||||||| Sbjct 211 CTAAACCGCTGGAACAGAGCACGAACCTTAAGGTCTGGCGCGAAGCTGGACAGTACGATT 270 Query 240 GCTAATGGATCAAACAGTACGAACGGTCCGATGCGTCCAATCGAAAGTTCGAATCGCTCT 299 ||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||| || Sbjct 271 ACTAATGGATCAAACAATACGACCGGTCCGATGCGTCCGATCGAAAGTTCGAGTCGCACT 330 Query 300 GATGTTTCGACACTT-GACAGTGACGTGTCATCATCAAGTAACGGAGATAACGAGACGGA 358 |||||||||||| || ||||| ||||||||||||||||||||||||| || |||| |||| Sbjct 331 GATGTTTCGACA-TTGGACAGCGACGTGTCATCATCAAGTAACGGAGTTAGCGAGGCGGA 389 Query 359 TATGACGGCGGCTAAGTCGATTTACATAGTCTCTGACGGAACTGGTTGGACGGCGGAACA 418 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 390 TATGACGGCGGCGAAGTCGATTTACATAGTCTCTGACGGAACTGGATGGACGGCGGAACA 449 Query 419 CGCCGTTAACGCTGCCTTGGGCCAATTCGATTATTGCTTGGTCGACCGTGGTTGTCCCGT 478 ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 450 CGCCGTTAACGCTGCTTTGGGACAATTCGACTATTGCTTGGTCGACCGTGGTTGTCCCGT 509 Query 479 TAATACACATCTCTTCTCAGGGATTGAAGATGGAGG-GAAGTTAATGGAGATCATAAAGC 537 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 510 TAATACACATCTCTTCTCAGGGATTGAAGATGG-GGAGAAGTTAATGGAGATCATAAAGC 568 Query 538 AAGCAGCAAAAGAAGGAGCAATGGTAATCTACACTTTAGCTGATCCATCAATGGCAGAAG 597 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 AAGCGGCAAGAGAAGGAGCAATGGTAATCTACACTTTAGCTGATCCATCAATGGCAGAAG 628 Query 598 CAACCATGAGAGCTTGCAAGCTATGGAAAATCCCATCACTAGACATTCTTGGACCAATCA 657 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 629 CAACCATGAGAGCTTGCAAGCTATGGAAAATCCCATCATTAGACATTCTTGGACCAATCA 688 Query 658 CAGACTCAATCTCTTCTCACTTAGGCACTAATCCTTCCGGTCTTTCACGTGGCATAACAA 717 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 CAGAGTCAATCTCCTCTCACTTAGGCACTAATCCTTCCGGTCTTTCACGTGGCATAACAA 748 Query 718 ACTCATCTCTCAACGAAGACTACTTCAAAAGAATCGAAGCTATCGAATTCACTATCAAAC 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 ACTCATCTCTCAACGAAGACTACTTCAAAAGAATCGAAGCTATCGAATTCACTATCAAAC 808 Query 778 ACGACGACGGTGCCTTGCCGGAGAATCTTGAAAAAGCTGACATTGTTCTTGTAGGTGTTT 837 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 809 ACGACGACGGTGCCTTGCCCGAGAATCTTGAAAAAGCTGACATTGTTCTTGTAGGTGTCT 868 Query 838 CTAGAACAGGGAAGACACCACTCTCTACTTACTTAGCTCAAAAGGGTTACAAAGTATCTA 897 |||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 869 CTAGGACAGGGAAGACACCACTCTCGACTTACTTAGCTCAAAAGGGCTACAAAGTCTCTA 928 Query 898 ACGTACCGATCGTGAACGGTGTAGATCTTCCCAAGACTCTGTTTGAGATCGACCCGAGAA 957 |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 929 ACGTACCGATTGTGAACGGTGTTGATCTTCCCAAGACTTTGTTTGAGATCGACCCGAGAA 988 Query 958 AGGTTTTTGGTCTGATGATTAATCCGGTGGTGTTGCAAGGGATAAGAGAGGCAAGAGCCA 1017 ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 989 AGGTTTTTGGTTTGATGATTAATCCATTGGTGTTGCAAGGGATAAGAGAGGCTAGAGCCA 1048 Query 1018 AGAGTCTTGGACTTGGTTCGAGTTTTAAGACTAAGTACTCTGAGTTGGGTTCTGTTAAAG 1077 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1049 AGAGTCTTGGACTTGGTTCGAGTTTTAAGACTAAGTACTCTGAGTTAGGTTCTGTTAAAG 1108 Query 1078 AAGAGCTTGAGCTTGCCAAGAGAATCTTTGCTGAGAATCCGACTTGGCCAGTGATTGAAG 1137 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1109 AAGAGCTTGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGAAG 1168 Query 1138 TGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTGAGGCTTTACGATGAGAGAC 1197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1169 TGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTTACGATGAGAGAC 1228 Query 1198 AAAGCAATCGAGCAATGCCTCGCATCTCTAAAAGCTACTAAATGATTATTATTCAAAGAT 1257 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1229 AAAGCAATAGAGCAATGCCTCGCATCTCTAAAAGCTACTAAATGATTATTATTCAAAGAG 1288 Query 1258 GATTT-AAATTAAGGTGGAAG-A-ATATATAGAGAAAATATAAATTGATAAAACTCTTTT 1314 ||||| ||||||||||| ||| | ||||||||||||||||| |||||||||||||||||| Sbjct 1289 GATTTGAAATTAAGGTGTAAGGATATATATAGAGAAAATATGAATTGATAAAACTCTTTT 1348 Query 1315 GTAAAAGCCCATTGGCACATTTTTACATGACCTTATTATTGGGTCAAAGCTAAAATCCAT 1374 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1349 GTAAA-GCCCATTGGCACATTTTTACATGACCATATTATTGGGTCAAAGCTAAAATCCAT 1407 Query 1375 ACAAATATTTCATTATT 1391 |||||||||||| |||| Sbjct 1408 ACAAATATTTCACTATT 1424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68523743925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5