BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492776
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21110.1 | Symbols: | G10 family protein | chr4:11267185-11... 1014 0.0
> AT4G21110.1 | Symbols: | G10 family protein | chr4:11267185-11268959
FORWARD LENGTH=738
Length=738
Score = 1014 bits (549), Expect = 0.0
Identities = 604/630 (96%), Gaps = 6/630 (1%)
Strand=Plus/Plus
Query 1 ATACCGATTTCCGAACACAACCCTAAAGAGAGGCTTC-T--ACGACGTTGGTTCTTCTTC 57
|||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||
Sbjct 1 ATACCGATTTCCGAACACAACCCT-AA-AGAGGCTTCTTCGACGACGTTGGTTCTTCTTC 58
Query 58 C-TTGTCCTGCGCCGCGATCTCTCCTTCTCCAACTTCCCTCGTCCTGTCCAAAGAAAATG 116
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTTTGTCCTGCGCCGCGATCTCTCCTTCTCCAACTTCCCTCGTCCTGTCCAAAGAAAATG 118
Query 117 CCAAAGGTTAAAACTAACCGAGTCAAGTACCCAGAAGGATGGGAGTTGATTGAGCCTACT 176
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 CCAAAGGTTAAAACTAACCGAGTCAAGTACCCAGAAGGATGGGAGTTGATCGAGCCTACT 178
Query 177 CTTCGAGAGCTAGACGCCAAGATGAGAGAAGCTGAGACAGATTCACATGATGGCAAAAGA 236
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 179 CTTCGAGAGCTTGATGCCAAGATGAGAGAAGCTGAGACTGATTCACATGATGGTAAGAGA 238
Query 237 AAGTGTGAAACTTTATGGCCAATCTTCAAAGTTTCTCATCAGAGGAGTCGTTATGTATAT 296
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 AAGTGTGAAACTTTATGGCCAATCTTCAAAGTTTCTCATCAGAGGAGTCGGTATGTATAT 298
Query 297 GATCTTTATTACCGACGGGAAGAAATATCTAAAGAGCTCTATGAGTTCTGCTTGGACCAG 356
|| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 GACCTTTATTACCGAAGGGAAGAAATATCTAAAGAGCTCTATGAATTCTGCTTGGACCAG 358
Query 357 GGCTATGCAGATCGCAGTCTGATTGCCAAATGGAAAAAGTCGGGATATGAACGTTTATGC 416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 GGCTATGCAGATCGCAGTCTGATTGCCAAATGGAAAAAGTCGGGATACGAACGTTTATGC 418
Query 417 TGCTTGCGCTGCATACAGCCTAGAGACCACAACTATGGAACAACATGTGTATGTCGTGTT 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 419 TGCTTGCGCTGCATACAGCCAAGAGACCACAACTATGGAACAACATGTGTATGCCGTGTT 478
Query 477 CCCAAACACTTGCGTGAAGAGAAAGTGGTCGAATGCGTTCACTGCGGGTGTCAAGGATGC 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 CCCAAACACTTGCGTGAAGAGAAAGTGGTCGAATGCGTTCACTGCGGCTGTCAAGGATGC 538
Query 537 GCTAGTGGCGATTAAATTCCACACAGCTTTATTCGCAATCCCTGACTGTTTGTCACAATC 596
|| |||||||||||||||| ||| |||||||||||| ||| |||||||||||| ||||||
Sbjct 539 GCGAGTGGCGATTAAATTCAACATAGCTTTATTCGCTATCTCTGACTGTTTGTTACAATC 598
Query 597 TTGTCACTTGTTAAATCTGGATTATGTATT 626
||||||||||||||||||||||||||||||
Sbjct 599 TTGTCACTTGTTAAATCTGGATTATGTATT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30190722347
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5