BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492803
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20830.1 | Symbols: | FAD-binding Berberine family protein ... 2887 0.0
AT4G20840.1 | Symbols: | FAD-binding Berberine family protein ... 1840 0.0
> AT4G20830.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11155453-11157806 FORWARD LENGTH=1975
Length=1975
Score = 2887 bits (1563), Expect = 0.0
Identities = 1806/1918 (94%), Gaps = 37/1918 (2%)
Strand=Plus/Plus
Query 46 CAAAATGCTCACGACACCTCCACGAACCTTTGtctctgtccctttcttcttcttcctcct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 30 CAAAATGCTCACGACACCTCCACGAACCTTTGTCTCTGTCCCTTTCTTCTTCTTCTTCCT 89
Query 106 cttcttctctctacctctctcatctctctctcaaccatctccttc-ctc-GTCGAGCTCT 163
| ||||| || | ||||| | | |||||| ||||| ||| ||| |||| ||||
Sbjct 90 CCTCTTC-CT-T---TCTCT-A-C-CTCTCT----CATCT--TTCTCTCAATCGAACTCT 135
Query 164 GTATACAACTCTTTCCTCAAATGTTTCTCCGACAAGACGAAATCTCCACAAACCCAAATC 223
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 136 GTATACAACTCTTTCCTCAAGTGTTTCTCCGACAAGACGAAATCTCCACAATCCCAAATC 195
Query 224 ACTGACAATGTCTTCTCTCAGAGC-AATCCTTCTTTCTCCTCCGTCCTCCGTGCTTACAT 282
|||||||||||||||||||||| | || ||| ||||||||||||| || |||||||||||
Sbjct 196 ACTGACAATGTCTTCTCTCAGA-CAAACCCTGCTTTCTCCTCCGTTCTTCGTGCTTACAT 254
Query 283 CCGCAATGCGAGGTTCAACACTTCATCTACTCCAAAACCCACCATCATAATCACTCCTCG 342
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 255 CCGCAATGCGAGGTTCAACACTTCCTCTACTCTTAAACCCACCATCATAATCACTCCTCG 314
Query 343 CTCCGAGAGCCACGTCAGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CTCCGAGAGCCACGTCAGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAA 374
Query 403 AATCCGAAGCGGCGGTCATGATTACGATGGTCTCTCTTACATTTCCGATAAACCCTTTTT 462
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 375 AATCCGAAGCGGCGGCCATGACTACGATGGTCTCTCTTACATTTCCGACAAACCATTTTT 434
Query 463 CATCCTCGACATGTCGAATATCCGTGATGTCTCTGTAGATATCGCCTCGAATTCGGCTTG 522
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 435 CATCCTCGACATGTCGAATATCCGTGACGTCTCTGTAGATATCGCCTCGAATTCGGCATG 494
Query 523 GATCTCCGCCGGAGCGACTCTCGGAGAGGTTTATTATCGGATTTGGGAGAAAAGCAAAGT 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 495 GATCTCCGCCGGAGCGACTCTCGGAGAGGTTTATTATCGGATTTGGGAGAAAAGCAGAGT 554
Query 583 CCATGGATTCCCTGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGCCATTTAAGCGGCGG 642
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 555 CCATGGATTCCCCGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGGCATTTAAGCGGCGG 614
Query 643 TGGTTACGGTAACATGTTGAGAAAATTCGGATTATCTGTGGATTACGTTGAGGATGCGAA 702
|||||||||||||||| |||| || || ||||||||||||||||||||||||||||| ||
Sbjct 615 TGGTTACGGTAACATGGTGAGGAAGTTTGGATTATCTGTGGATTACGTTGAGGATGCCAA 674
Query 703 GATCGTCGATGTAAACGGTCGGGTTTTAGATCGGAAATCAATGGGTGAGGATCTTTTCTG 762
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 675 GATCGTCGATGTAAACGGTCGGGTTTTAGATCGGAAAGCAATGGGTGAGGATCTTTTCTG 734
Query 763 GGCGATTACCGGTGGAGGAGGAGGTAGCTACGGCGTCGTTTTGGGATACAAGGTCAAGCT 822
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 735 GGCGATTACCGGTGGAGGAGGAGGTAGCTACGGCGTCGTTTTGGGATACAAAGTCAAGCT 794
Query 823 TGTTCCTGTGCCATCGATCGTTACGGTTTTTAGAGTGGAGCAGTATATGGATTCAGGAGC 882
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 795 TGTTCCTGTGCCATCGGTCGTTACGGTGTTTAGAGTGGAGCAGTATATGGATTCAGGAGC 854
Query 883 TGTGGATATGGTTTATAAATGGCAATCGGTTGGTCCGAAAACCGA-CCGGAATCTGTTTA 941
||||||||||||| | |||||||||||||||||||||||||| || || |||||||||||
Sbjct 855 TGTGGATATGGTTCACAAATGGCAATCGGTTGGTCCGAAAACTGATCC-GAATCTGTTTA 913
Query 942 TGAGAATGTTGATTCAACCAGTTACGAGGAAGAAGGTGAAGACTGTGAGAGCTTCTGTGG 1001
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 914 TGAGAATGTTGATTCAACCAGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTTCTGTGG 973
Query 1002 TTGCTCTGTTTTTAGGCAGAGCAGAT-ACAGTTGTTGCTTTGCTTCGTAAGGAGTTTCCT 1060
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 974 TTGCTCTGTTTTTAGGCAGAGCAGATGA-AGTTGTTGCTTTGCTTAGTAAGGAGTTTCCT 1032
Query 1061 GAATTGGGTTTAAAGAAGGAGAATTGTACGGAGATGACTTGGTTTCAGTCTGCTTTATGG 1120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1033 GAATTGGGTTTAAAGAAGGAGAATTGTTCGGAGATGACTTGGTTTCAGTCTGCTTTATGG 1092
Query 1121 TGGGATAATCGTGTTAACGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTT 1180
||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TGGGACAATCGTCTTAATGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTC 1152
Query 1181 GATACAGCGAGTTTCGGGAAGAGGAAATCGGACTATGTCGCGACTGCGATTCCTAGGAAA 1240
||||| |||||||||| |||||||||||||| || ||||||||||||||||| | ||||
Sbjct 1153 GATACCTCGAGTTTCGGTAAGAGGAAATCGGATTACGTCGCGACTGCGATTCCGAAGAAA 1212
Query 1241 GGTATTGAGTCTTTGTTCAAGAAGATGATCGAGTTAGGGAAAATCGGGCTTGTTTTCAAT 1300
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1213 GGGATTGAGTCTTTGTTCAAGAAGATGATTGAGTTAGGGAAAATCGGGCTTGTTTTCAAT 1272
Query 1301 CCGTATGGAGGGAAAATGGCGGAGGTTGCGGTTAACGCGACGCCATTTCCTCATCGAAAC 1360
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 1273 CCGTATGGAGGGAAAATGGCGGAGGTTGCGGTTAACGCGAAGCCGTTTCCACATCGAAAC 1332
Query 1361 AAGCTTTTCAAGATTCAGTACTCTGTGAACTGGAAAGAAAACTCTGCAGAGATAGAGAAG 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGCTTTTCAAGATTCAGTACTCTGTGAACTGGAAAGAAAACTCTGCAGAGATAGAGAAG 1392
Query 1421 GGGTACTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGTTTTGTGAGCAAGAAC 1480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1393 GGGTACTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGGTTTGTGAGCAAGAAT 1452
Query 1481 CCTAGGAGTGCGTACTTCAATTACCGGGATGTGGATATCGGTGTGAATGATCATGGGGTG 1540
||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1453 CCTAGGAGTTCTTACTTCAATTACCGGGATGTCGATATCGGTGTGAATGATCATGGGGCG 1512
Query 1541 AATAGTTACAAGGAAGGAGAGGTGTATGGAAAGAAGTATTTTGGAGAGAATTTCGATCGA 1600
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1513 AATAGTTACAAGGAAGGAGAGGTGTATGGAAGGAAGTATTTCGGAGAGAATTTCGATCGA 1572
Query 1601 TTAGTGAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATA 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TTAGTGAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATA 1632
Query 1661 CCTACCTTGAAAAATGCA-AAGGGAACGTTGTTGCCTGAGCCGGGAAAGGCGAAACGGTG 1719
|||||||||||||||| | ||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1633 CCTACCTTGAAAAATG-AGAAGGGAATGTTGTTGCCTGAGCCGGGAAAGGCCAGACGGTG 1691
Query 1720 GTCACGAGCTGGAGGAGCCACCGTAGTTGCGACGGTGGTCTTACATGTCTTCTAGAATCT 1779
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 GTCACGAGTTGGAGGAGCCACCGTAGTTGCGACGGTGGTCTTACATGTCTTCTAGAATCT 1751
Query 1780 TGAGATTG-ttttt-t---gttttgttttGAATTGTTGAGTGATGATATCTCTTCATAAG 1834
| |||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1752 TAAGATTGCTTTTTGTATTGTTTTGTTTTGAATGGTTGAGTGATGATATCTCTTCATAAG 1811
Query 1835 ATGAACAGAGCCTCACTCTTTCAGATCTTTCTAAGTTATCTGAAGTAGTTGCAAGTGTTT 1894
|||||||||| |||||||||| ||||||||| || | ||||||| | || || ||||
Sbjct 1812 ATGAACAGAGTCTCACTCTTTTAGATCTTTCCAA-T---CTGAAGT--T-GCGAGAGTTT 1864
Query 1895 TTAAAGGTT-GAGATTTGCATTAGAAACAGAGCATACAATGAAGTGTTAGTGAGTGGG 1951
||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1865 TTAAAGGTTCGAGATTTGCATTAGAAACAGAGCATACAATGAATTGTTAGTCAGTGGG 1922
> AT4G20840.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11157916-11159535 FORWARD LENGTH=1620
Length=1620
Score = 1840 bits (996), Expect = 0.0
Identities = 1420/1620 (88%), Gaps = 47/1620 (3%)
Strand=Plus/Plus
Query 66 CACGAACCTTTGtctctgtccctttcttct-tcttcctcctcttcttctctctacctctc 124
||| |||||||||||||||| |||||| | ||||| ||||| | |||||| ||| |
Sbjct 11 CACAAACCTTTGTCTCTGTCTTTTTCTT-TGTCTTCTTCCTCGT-ATCTCTC--CCT-T- 64
Query 125 tcatctc-tctctcaaccatctccttcctcGTCGAGCTCTGTATAC-AACTCTTTC-CTC 181
|| |||| || | | | || |||| || || | || ||| | ||| || || ||| ||
Sbjct 65 TCTTCTCATC-CGC-AGCACCTCCGTCTTC-T-GA-TTCTATCTACGAA-TCATTCGTTC 118
Query 182 AAATGTTTCTCCGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCT 241
||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 119 -AATGTTTCTCCGACAAGACAAAATCTCCACAAGCCCAAATCACCGACAATGTCTTCTCT 177
Query 242 CAGAGC-AATCCTTCTTTCTCCTCCGTCCTCCGTGCTTACATCCGCAAT-GCGAGGTTCA 299
| || | || |||||||||||||||||||| ||||||||||| || ||| || |||||||
Sbjct 178 CGGA-CAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGC-AGGTTCA 235
Query 300 ACACTTCATCTACTCCAAAACCCA-CCATCATAATCACTCCTCGCTCCGAGAGCCACGTC 358
||||||||||||| |||||| ||| | ||||| |||||||||||||||| | |||||||
Sbjct 236 ACACTTCATCTACGCCAAAA-CCAGCTATCATCGTCACTCCTCGCTCCGATATCCACGTC 294
Query 359 AGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAAAATCCGAAGCGGCGGT 418
||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||
Sbjct 295 AGCGCCGCCGTCACTTGCTCAAAAAGTTTAAATTTCCTTCTCAAAATCCGAAGTGGTGGC 354
Query 419 CATGATTACGATGGTCTCTCTTACATTTCCGATAAACCCTTTTTCATCCTCGACATGTCG 478
||||||||||| |||||||||||||| || |||||||| ||||| || ||||||||||||
Sbjct 355 CATGATTACGAAGGTCTCTCTTACATCTCTGATAAACCATTTTTTATACTCGACATGTCG 414
Query 479 AATATCCGTGATGTCTCTGTAGATATCGCC--TCGAATTCGGCTTGGATCTCCGCCGGAG 536
||| |||||||||||||||| ||||||||| || ||| | |||||||||||||||||||
Sbjct 415 AATCTCCGTGATGTCTCTGTTGATATCGCCGATC-AAT-CAGCTTGGATCTCCGCCGGAG 472
Query 537 CGACTCTCGGAGAGGTTTATTATCGGA-TTTGGGAGAAAAGCAAAGTCCATGGATT-CCC 594
| ||||| || ||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct 473 CAACTCTTGGTGAGGTTTATTA-CAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCC 531
Query 595 TGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGCCATTTAAGCGGCGGTGGTTACGGTAA 654
|||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 532 -GCCGGAGTTTGTCCCACGGTTGGTGTTGGTGGACATATAAGCGGTGGTGGTTACGGTAA 590
Query 655 CATGTTGAGAAAATTCGGATTATCTGTGGATTACGTTGAG-GATGCGAAGATCGTCGATG 713
|||||||| |||||||||||||| || ||| || |||| |||||||||||||| ||||
Sbjct 591 TATGTTGAGGAAATTCGGATTATCAGTTGATAAC-TTGATCGATGCGAAGATCGTTGATG 649
Query 714 TAAACGGTCGGGTTTTAGATCGGAAATCAATGGGTGAGGATCTTTTCTGGGCGATTACCG 773
| ||||||| ||||||| |||||||| ||||||||||||||||| ||||| ||| |||
Sbjct 650 TTAACGGTCAAATTTTAGACCGGAAATCGATGGGTGAGGATCTTTTTTGGGCTATTTCCG 709
Query 774 GTGGAGGAGGAGG-TAGCTACGGCGTCGTTTTGGGATACAAGGTCAAGCTTGTTCCTGTG 832
|||||||||| || ||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct 710 GTGGAGGAGG-GGCTAGCTTCGGCGTCGTTTTGGGTTACAAGGTCAAGCTCGTTCCTGTG 768
Query 833 CCATCGA-TCGTTACGGTTTTTAGAGTGGAGCAGTATATGGATTCAGGAGCTGTGGATAT 891
||| | | ||||| || ||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 769 CCAGAAACT-GTTACAGTCTTTAGGGTGGAGAAGTATATGGATTCAGGAGCGGTGGATAT 827
Query 892 GGTTTATAAATGGCAATCGGTTGGTCCGAAAACCGACCGGAATCTGTTTATGAGAATGTT 951
|||| | ||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 828 GGTTCACAAATGGCAATCCGTTGGTCCAAAAACCGACCGGAATCTATTTTTGAGAATGTT 887
Query 952 GATTCAACCAGTTACGAGGAAGAAGGTGAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTT 1011
||||||||| || |||||||||||||| ||||||||||||||| ||||||| ||||||||
Sbjct 888 GATTCAACCGGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTACTGTGGTGGCTCTGTT 947
Query 1012 TTTAGGCAGAGCAGAT-ACAGTTGTTGCTTTGCTTCGTAAGGAGTTTCCTGAATTGGGTT 1070
||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 948 TTTAGGCAGAGCAGAGGA-AGTTGTTGCTTTGCTTGGTAAGGAGTTTCCTGAATTGAGTT 1006
Query 1071 TAAAGAAGGAGAATTGTACGGAGATGACTTGGTTTCAGTCTGCTTTATGGTGGGATAATC 1130
||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1007 TAAAGAAGGAGAACTGTTCGGAGATGACTTGGTTTCAGTCAGCTTTATGGTGGGATAATC 1066
Query 1131 GTGTTAACGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATACAGCGA 1190
|||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1067 GTGTTAACCCTACTCAGATTGATCCTAAAGTGTTTCTCGATCGGAATCTTGATAGAGCGA 1126
Query 1191 GTTTCGGGAAGAGGAAATCGGACTATGTCGCGACTGCGATTCCTAG-GAAAGGTATTGAG 1249
|||||| |||||||||||||| || || |||| || ||||||||| || || ||||||
Sbjct 1127 ATTTCGGAAAGAGGAAATCGGATTACGTTGCGAGTGAGATTCCTAGAGATGGG-ATTGAG 1185
Query 1250 TCTTTGTTCAAGAAGATGA-TCGAGTTAGGGAAAATCGGGCTTGTTTTCAATCCGTATGG 1308
||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||||||
Sbjct 1186 TCTTTGTTCAAGAAGATGACT-GAGCTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGG 1244
Query 1309 AGGGAAAATGGCGGAGGTTGCGGTTAACGCGACGCCATTTCCTCATCGAAACAAGCTTTT 1368
|||||||||||||||||| |||||||||||||||| ||||| || |||| |||||||||
Sbjct 1245 TGGGAAAATGGCGGAGGTTACGGTTAACGCGACGCCGTTTCCGCACCGAAGCAAGCTTTT 1304
Query 1369 CAAGATTCAGTACTCTGTGAACT-GGAAAGAAAACTCTG-CAGAGATAGAGAAGGGGTAC 1426
|||||||||||||| |||| || || |||||||||||| | |||||||||||||| | |
Sbjct 1305 TAAGATTCAGTACTCGGTGA-CTTGGCAAGAAAACTCTGTC-GAGATAGAGAAGGGTTTC 1362
Query 1427 TTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGTTTTGTGAGCAAGAACCCTAGG 1486
|||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1363 TTGAATCAGGCTAACGTTCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCTAGA 1422
Query 1487 AGTGCGTACTTCAATTACCGGGATGTGGATATCGGTGTGAATGATCATGGGGTGAATAGT 1546
| ||| ||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 1423 AATGCTTACTTGAATTACCGAGATGTCGATATAGGTGTGAATGATCATGGTACGAATAGT 1482
Query 1547 TACAAGGAAGGAGAGGTGTATGGAAAGAAGTATTTTGGAGAGAATTTCGATCGATTAGTG 1606
|| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1483 TATGAGGAAGGAGAAGTGTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTA 1542
Query 1607 AAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATACCTACC 1666
||| ||||||| |||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1543 AAGGTTAAAACAGCGGCTGATCCAGATAATTTCTTCAGGAATGAACAGAGTATACCTACC 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96636049125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5