BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492835 Length=1096 Score E Sequences producing significant alignments: (Bits) Value AT4G20330.1 | Symbols: | Transcription initiation factor TFIIE... 1557 0.0 AT4G21010.1 | Symbols: | Transcription initiation factor TFIIE... 676 0.0 AT4G24652.1 | Symbols: | Pseudogene of AT4G20330; transcriptio... 377 1e-103 > AT4G20330.1 | Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:10982517-10984521 REVERSE LENGTH=1154 Length=1154 Score = 1557 bits (843), Expect = 0.0 Identities = 982/1049 (94%), Gaps = 9/1049 (1%) Strand=Plus/Plus Query 53 CGTTGTATTCTTTCTCCAAAGAAGATGGCTTTAAAGGAGCAGCTGGATAAATTCAACAAA 112 ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||| Sbjct 104 CGTTGTATTCTTTCTCCAAGGAAGATGGCTCTAAAGGAACAGCTAGATAAATTCAACAAA 163 Query 113 CAGCAAGTGAAATGCCAATCTACGCTATCGAGCATTGCTTCTTCAAGAGAAAGAACAG-G 171 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | | Sbjct 164 CAGCAAGTGAAATGCCAATCTACTCTTTCGAGCATTGCTTCTTCCAGAGAAAGAAC-GAG 222 Query 172 GTCTTCGAGGCAGTCTGTGCCTTTGCCTGCGGCAATCA-GTCAGAAGAAGCCTGATGCAG 230 |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 223 TTCTTCGAGGCAGAATGTGCCTTTGCCTGCGGCAATCACG-CAGAAGAAGCCTGATGCAG 281 Query 231 CTCCTGTCAAGTTTTCAAACGATACCGAGCGACTTCAGATTATTAACAACATTAGAAAAG 290 |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 282 CTCCTGTCAAGTTTTCAAGCGATACCGAGCGACTTCAGAACATTAACAACATTAGAAAAG 341 Query 291 CTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCT 350 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 342 CTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTATGAGAGAAGGCTAGCCT 401 Query 351 TAACTCCAGAGCAAATAAATGAATTGTGTCATGTTGATATGCATGCCAATAAGGCTGTTT 410 | || ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 402 TGACGCCAGAGCAAATAAATGAATGGTGTCATGTAGATATGCATGCTAATAAGGCTGTTT 461 Query 411 TTGATAGTTTGAGGAAGAATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTATAAGG 470 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 462 TTGATAGTTTAAGGAAGAATCCGAAAGCACATTATGATGGAAGAAGGTTCTCTTATAAGG 521 Query 471 CTACACACGATGTCAAGGACAAGAACCAGCTTCTTTCGTTGGTGAGTAAATACCCTGATG 530 |||| |||||||| || || ||||||||||||||||| |||||||| ||||||| ||||| Sbjct 522 CTACGCACGATGTTAATGATAAGAACCAGCTTCTTTCATTGGTGAGAAAATACCTTGATG 581 Query 531 GGATTGCGGTGGTTGATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTGAAGGCTC 590 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 582 GGATTGCGGTGGTTGATCTCAAAGACGCTTACCCTAATGTAATGGAGGATTTGAAGGCTC 641 Query 591 TGAGTGCTTCAGAGGACATCTGGTTGCTATCAAATTCACAAGAGGACATTGCGTACCCAA 650 |||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 642 TGAGTGCTTCAGGGGACATCTACTTGCTATCAAATTCACAAGAGGACATTGCATACCCAA 701 Query 651 ATAATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAG 710 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 ATGATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAA 761 Query 711 ACATCCCGAGCGACATGCTGGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGG 770 ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 762 ACATCCCGAACGACATGCTGGACGTGGAGAAGGAGCTGCTGAAAATCGGTTTGAAGCCGG 821 Query 771 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACCCATGGCGTATCGAATAAACCGA 830 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct 822 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACGCATGGCATATCGAATAAACC-A 880 Query 831 AA-GATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCAT 889 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 AAGGATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCAT 940 Query 890 CTTCCCGAGCTTTTCCAGAGCCTTAATGCCAGCAGTTCCCGGAACTGAACCTCATAAATG 949 ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 941 CTTCCCGAGCTTTTCCAGAACCTTAACGGCAGCAGTTCCCGGAACTGAACCTCATAAATG 1000 Query 950 GATGATCATGCGGTTCAAAACTCAAATTGATCCTGAATTTTCTTGTAATTGTAAT--T-G 1006 |||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||| | | Sbjct 1001 GATGATCATGCGGTTCTAAATTCATATTGAGCCTGAATTTTCTTGTAATTGTAATAATTG 1060 Query 1007 TTACGATCTTGAGCTTACAAATTACAATGGTTTTCATGTATTCTCACAACATTTGTTAGA 1066 |||| ||||| || ||||||||||||||| || |||||||||||||| ||||||| |||| Sbjct 1061 TTACAATCTTTAGTTTACAAATTACAATGATTCTCATGTATTCTCACGACATTTGCTAGA 1120 Query 1067 AATATAGAATAAACACATTTATGAGTTGG 1095 |||||||||||||||||||| ||||||| Sbjct 1121 AATATAGAATAAACACATTTGGGAGTTGG 1149 Score = 93.5 bits (50), Expect = 4e-18 Identities = 64/70 (91%), Gaps = 3/70 (4%) Strand=Plus/Plus Query 1 TCTCTCGTCGATAAAGCAAAAAATCAAATCAAGCTTCTTCTTCGATCTTCTTCGTT-G-T 58 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 4 TCTATCGTCGATAAAGCAAAAAATCAAATCAAGCTTCTTCTTCGATCTTCTTC-TTCGAT 62 Query 59 ATTCTTTCTC 68 ||||| ||| Sbjct 63 CTTCTTCCTC 72 > AT4G21010.1 | Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:11226286-11227363 REVERSE LENGTH=859 Length=859 Score = 676 bits (366), Expect = 0.0 Identities = 702/856 (82%), Gaps = 55/856 (6%) Strand=Plus/Plus Query 77 ATGGCTTTAAAGGAGCAGCTGGATAAATTCAACAAACAGCAAGTGAAATGCCAATCTACG 136 |||||||| ||||||||| ||||| ||||| |||||||||| |||||||||||||||| Sbjct 1 ATGGCTTTGCGGGAGCAGCTTGATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60 Query 137 CTATCGAGCATTGCTTCTTCAAGAGAAAGAACAGGGTC-TTCGAGGCAGTCTGTGCCTTT 195 || ||||||||| ||||||| |||||| || | ||||| | | || | | | Sbjct 61 CTTTCGAGCATTTCTTCTTC------AAGAAC-GGCCCTTTCGA-G-A-TC-AT-AC-GT 107 Query 196 GCCTGCGGCAATCAGTCAG-AAGAAGCCTGATGCAGCTCCTGTCAAGTTTTCA-AACGAT 253 |||||| |||| || ||| |||||||| ||| | || || |||||||||| || | Sbjct 108 GCCTGCAGCAA-CAACCAGTCAGAAGCCTAATGTATTTCGTGGCAAGTTTTCAGAA-AAC 165 Query 254 ACCGAGCGACTTCAG-ATTATTAACAACATTAGAAA-AGCTCCTGTTGGAGCTCAAATCA 311 || ||| ||||||| | |||| |||||| ||||| || | |||||||||||||||| | Sbjct 166 ACAAAGCAACTTCAGCA-CATTACCAACATAAGAAACAG-TGCTGTTGGAGCTCAAATGA 223 Query 312 AGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCTTA-ACTCCAGAGCAAATAAAT 370 || ||||||||||||| | ||| ||| |||||||| |||| || |||||||||||||| Sbjct 224 AGATTGTCATTGATCTTTTGTTTAAGACAAGGCTAG-CTTATACGGCAGAGCAAATAAAT 282 Query 371 GAA--TTGTGTCATGTTGATATGCATGCCAATAAGGCTGTTTTTGATAGTTTGAGGAAGA 428 ||| |||| | | |||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 283 GAAGCTTGT-T-ACGTTGATATGCATAACAACAAGGCTGTTTTTGATAGTTTGAGGAAGA 340 Query 429 ATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTATAAGGCTACACACGATGTCAAGG 488 |||| |||| ||||||||| |||||||||||||||||||||||||| ||| || |||||| Sbjct 341 ATCCTAAAGTGCATTATGACGGAAGAAGGTTCTCTTATAAGGCTACGCACAATATCAAGG 400 Query 489 ACAAGAACCAGCTTCTTTCGTTGGTGAGTAAAT-ACCCTGATGG-GATTGCGGTGGT-TG 545 ||||||| || ||||||||||| |||| ||||| | | | || ||||| ||| | || Sbjct 401 ACAAGAAGCAACTTCTTTCGTTTGTGAATAAATCAGA-TAA-GGTGATTGATGTG-TCTG 457 Query 546 ATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTGAAGGCTCTGAG-TGCTTCAG-A 603 |||||||||| ||||||||||||||||| || ||||||||| |||| | | |||||| | Sbjct 458 ATCTCAAAGATGCTTACCCGAATGTAATGGAAGATTTGAAGTCTCTAAAAT-CTTCAGGA 516 Query 604 GGA--CATCTGGTTGCTATCAAA---T--T-CACAAGAGGACATTGCGTACCCAAATAAT 655 | | | |||||||||||||||| | | || |||||| || || ||| | ||||||| Sbjct 517 GAAATCTTCTGGTTGCTATCAAACACTGATTCAAAAGAGGGCACTGTGTATCGAAATAAT 576 Query 656 TTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAGACATC 715 | ||| | || | | |||||||||| |||||||||||||||||||||| |||| Sbjct 577 ATGGAGTATCCGA--A-GATTGATGACGAGCTTAAAGCTCTATTCCGTGACAT---CATC 630 Query 716 CCGAGCGACATGCTGGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGGCGACA 775 |||||||||||||| || |||||||||||| |||||||||||||||||||||| || ||| Sbjct 631 CCGAGCGACATGCTTGAGGTGGAGAAGGAGTTGCTGAAGATTGGTTTGAAGCCAGCCACA 690 Query 776 AACACTGCAGAGAGGAGAGCTGCTGCACAGAC-CCATGGCGTATCGAATAAACCGAAAG- 833 |||| |||||||||||||||||||| |||| | ||||||||||||||||||||| |||| Sbjct 691 AACATTGCAGAGAGGAGAGCTGCTGAACAG-CTCCATGGCGTATCGAATAAACC-AAAGG 748 Query 834 ATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCATCTTC 893 ||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||| | | Sbjct 749 ATAAGAAGAAGAAGAAAAAAGAGATCACCAACAGAACCAAACTCACCAATTCCCATATGC 808 Query 894 CCGAGCTTTTCCAGAG 909 |||||| |||||||| Sbjct 809 TCGAGCTCTTCCAGAG 824 > AT4G24652.1 | Symbols: | Pseudogene of AT4G20330; transcription initiation factor-related | chr4:12722395-12722952 REVERSE LENGTH=360 Length=360 Score = 377 bits (204), Expect = 1e-103 Identities = 313/363 (86%), Gaps = 17/363 (5%) Strand=Plus/Plus Query 237 TCAAGTTTTCAAACGATACCG-AGCGACTTCAGATTATTAACAACATTAGAAAAGCTCCT 295 |||||||||||||||||| || ||||||||||| | ||||||| ||||||| |||||| | Sbjct 2 TCAAGTTTTCAAACGATA-CGAAGCGACTTCAGCTCATTAACAGCATTAGAGAAGCTCAT 60 Query 296 GTTGGAG----CTCAAATCAAGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCTT 351 ||||||| |||||||||||| |||||||||||||||| |||| | |||||||||||| Sbjct 61 GTTGGAGCTCACTCAAATCAAGCATGTCATTGATCTTCTCATTGATAGAAGGCTAGCCTT 120 Query 352 AACTCCAGAGCAAATAAATG-A-ATTG--TGT-CATGTTGATATGCATGCCAATAAGGCT 406 ||| || ||||| ||||||| | | || | | |||||||||||||| ||||||||||| Sbjct 121 AACACCCGAGCATATAAATGAAGAGTGATTATATATGTTGATATGCATTCCAATAAGGCT 180 Query 407 GTTTTTGATAGTTTGAGGAAGAATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTAT 466 |||||||||||||||||||||||||||| | ||||||||| |||| ||| |||||||| Sbjct 181 GTTTTTGATAGTTTGAGGAAGAATCCGATATTGCATTATGACGGAACAAGATTCTCTTAC 240 Query 467 AAGGCTACAC-A-CGATGTCAAGGACAAGA-ACCAGCTTCTTTCGTTGGTGAGTAAATAC 523 |||| || || | ||||||||||||||||| || || |||||||||||||| || ||||| Sbjct 241 AAGG-TA-ACTAACGATGTCAAGGACAAGAGAC-AGGTTCTTTCGTTGGTGGGTGAATAC 297 Query 524 CCTGATGGGATTGCGGTGGTTGATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTG 583 |||||||||||| ||| |||| ||||||||||||||| |||||||| || ||||||||| Sbjct 298 ACTGATGGGATTGTGGTAGTTGTTCTCAAAGACGCTTAGCCGAATGTCATGGAGGATTTG 357 Query 584 AAG 586 ||| Sbjct 358 AAG 360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53714583150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5