BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492857
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20110.2 | Symbols: VSR7 | VACUOLAR SORTING RECEPTOR 7 | chr... 3085 0.0
AT2G34940.1 | Symbols: VSR5, VSR3;2, BP80-3;2 | VACUOLAR SORTIN... 566 4e-160
> AT4G20110.2 | Symbols: VSR7 | VACUOLAR SORTING RECEPTOR 7 | chr4:10875233-10878729
FORWARD LENGTH=2405
Length=2405
Score = 3085 bits (1670), Expect = 0.0
Identities = 1952/2085 (94%), Gaps = 32/2085 (2%)
Strand=Plus/Plus
Query 213 TTCAGTGATGGGTTTAGTCAACGGGAGAGCTTCGTTGACCTTTCTCCTCGCAACGTTGAC 272
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 328 TTCAGAGATGGGTTTAGTCAACGGGAGAGCTTCGTTGACCTTTCTCCTCGCGGCGTTGAC 387
Query 273 CATCATCGCGATGGTCGTTGACGCGAGGTTTGTGGTGGAGAAAGAAAGCATAAGCGTGCT 332
||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 388 CATCATCGCTATGGTCGTCGAGGCTAGGTTTGTGGTGGAGAAAGAAAGCATAAGCGTGCT 447
Query 333 AAATCCCGAGGAGATGAGGTCGAAGCGCGACGGTTCGATAGCCAACTTCGGGTTACCCGA 392
||||| ||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||
Sbjct 448 GAATCCAGAGGAGATGAGGTCGAAGCACGACGGCTCGATAGCCAATTTCGGTTTACCCGA 507
Query 393 TTACGGCGGGTTTCTAATAGGGTCGGTGGTTTATCCGGATAGTAAAACCGATGGATGCTC 452
|||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 508 TTACGGTGGGTTTTTAATCGGGTCAGTGGTTTATCCGGATAGTAAAACCGATGGATGCTC 567
Query 453 TGCTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTCTTGATCG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGCTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTCTTGATCG 627
Query 513 TGGAGGTTGTTACTTTGCCTTAAAAGCGTGGCACGCTCAGCAAGCAGGCGCCGCGGCAGT 572
||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 628 TGGAGGTTGCTACTTTGCCTTAAAAGCGTGGCACGCGCAGCAAGCAGGCGCGGCTGCAGT 687
Query 573 TCTTGTGGCGGATAATGTAGATGAGCCATTGTTAACAATGGATTCACCAGAGGAGAGCAA 632
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 688 TCTTGTGGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGAGCAA 747
Query 633 AGATGCAGATGGGTTCATAGAGAAGCTAACAATCCCATCGGTTTTAATCGATAAATCGTT 692
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 748 AGATGCGGATGGTTTCATAGAGAAGCTAACAATCCCATCGGTGTTAATCGATAAATCATT 807
Query 693 CGGAGATGACTTAAGAAAAGGGTTTCAGAAAGGTAAAAACATAGTCT-TGAAACTAGATT 751
||||||||||||||| |||||||||||||||| ||||||||||| | | ||||||||||
Sbjct 808 TGGAGATGACTTAAGACAAGGGTTTCAGAAAGGGAAAAACATAGT-TATAAAACTAGATT 866
Query 752 GGAGAGAATCTGTGCCTCATCCTGATCAGCGAGTAGAATATGAGCTGTGGACTAATAGCA 811
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 867 GGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACTAATAGCA 926
Query 812 ACGACGAGTGTGGTGCACGGTGCGATGAACAGATGGATTTTGTCAAGAACTTTAAGGGTC 871
| || ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 927 ATGATGAGTGTGGTGCACGGTGTGATGAACAGATGGACTTTGTCAAGAACTTTAAAGGTC 986
Query 872 ATGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACGCCACATTATATCACATGGT 931
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 987 ATGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACGCCGCATTATATTACTTGGT 1046
Query 932 TTTGCCCTTTTCAGTTTATAAACAGTCCACATTGTAAGTCTCAGTGTATAAACCATGGGA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TTTGCCCTTTTCAGTTTATAAACAGTCCACATTGTAAGTCTCAGTGTATAAACCATGGGA 1106
Query 992 GGTATTGTGCTCCTGACCCTGAGAACAATTTCAGAGAAGGTTATGAAGGCAAAGATGTTG 1051
||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||
Sbjct 1107 GGTATTGTGCTCCTGACCCTGAGGATAATTTCAGAGAAGGGTATGAAGGGAAAGATGTTG 1166
Query 1052 TGCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTGCGAATGAGAGTAGCCGGCCTT 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1167 TGCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTGCGAATGAGAGTAGCAGGCCTT 1226
Query 1112 GGGTTTGGTGGGATTATGTTACCGATTTTCATTCGCGATGTTCGATGAAGGAGAAGAAAT 1171
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1227 GGGTTTGGTGGGATTATGTTACCGATTTTCATTCTCGATGTTCGATGAAGGAGAAGAAAT 1286
Query 1172 TTAGCATAGAATGTGCTGAGAG-CAT-CATC---AA-A--TCTATGA-ATTTACCTATTG 1222
|||||||| ||||||||||| || ||| || | | | | | ||||||||||||
Sbjct 1287 ACAGCATAGATTGTGCTGAGAGTTATGAATCTTTAAGACTTTTTTCAGATTTACCTATTG 1346
Query 1223 AGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACTGAGAACCAAGTTCTGAGAA 1282
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1347 AGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACAGAGAACCAAGTTCTGAGAA 1406
Query 1283 TC-GAGCAAGTATCCCAGATTGGCCGAGGTAACCGGGGAGATGTTACGATATTGCCAACA 1341
| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1407 -CTGAGCAAGTATCTCAGATTGGCCGAGGAAACCGGGGAGATGTTACGATATTGCCAACA 1465
Query 1342 TTAGTCATCAATAACGCCCAATATCGAGGGAGATTGGAGAGAACCGCTGTTCTAAAGGCG 1401
||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1466 TTAGTCATCAATAACGCTCAATATCGAGGGAGATTGGAGAGAACCGCGGTTTTAAAGGCG 1525
Query 1402 ATATGCGCTGGATTCAACGAAACATCGGAACCTCCCATTTGCTTAAACACAGGTTTAGAG 1461
||||||||||| || || ||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 1526 ATATGCGCTGGTTTTAATGAAACATCGGAGCCTGCCATTTGCTTAAACACAGGTCTAGAG 1585
Query 1462 ACAAATGAGTGCCTTGAAAACAATGGTGGTTGCTGGCAGGACACAAAAGCAAACATAACC 1521
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1586 ACAAATGAGTGCCTTGAAAACAATGGTGGTTGCTGGCAGGATACAAAAGCAAACATCACT 1645
Query 1522 GCTTGTCAAGACACATTCAGAGGACGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAA 1581
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1646 GCTTGTCAAGACACATTCAGAGGAAGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAA 1705
Query 1582 TATAAAGGCGACGGGTACACTTCATGTACACCTTATGGGCCTGCCAGGTGTACTATTAAC 1641
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1706 TATAAAGGAGACGGGTACACTTCATGTACACCTTATGGGCCTGCGAGGTGTACTATGAAC 1765
Query 1642 AATGGAGGTTGCTGGTCTGACACAAGAAATGGCTTAACTTTCTCTGCTTGCTCAGACTCT 1701
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1766 AATGGAGGTTGCTGGTCTGACACAAGGAACGGCTTAACTTTCTCTGCTTGCTCAGACTCT 1825
Query 1702 GTGTCTACTGGCTGCAAATGTCCTGAAGGTTTCCAAGGCGACGGTTTCACGTGTGAAGAT 1761
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1826 GTATCTACTGGCTGCAAATGTCCTGAAGGTTTCCAAGGCGACGGTTTGACGTGTGAAGAT 1885
Query 1762 ATTAACGAATGTAAAGAGCGTTCGGTGTGTCAATGTAGCGGTTGCAGATGCAAGAACTCA 1821
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1886 ATTAACGAATGTAAAGAGCGTTCGGTATGTCAATGTAGCGGTTGCAGATGCAAGAACTCA 1945
Query 1822 TGGGGTGGATACAAATGCAGTTGTTCTGGCGACAAGCTTTACATAAACGATCAAGATACT 1881
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 1946 TGGGGTGGATACAAATGCAGCTGTTCTGGTGACCGGCTTTACATAAACGATCAAGATACT 2005
Query 1882 TGTATAGAGAGATATGGATCCAAAACAGCATGGTGGCTCACACTCTTGATCCTAGCTATC 1941
|||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||
Sbjct 2006 TGTATAGAGAGATATGGATCCAAAACGGCATGGTGGCTCACATTCTTGATACTGGCTATC 2065
Query 1942 GTCGCAGTAGCCGGTTTAGCTGGTTATCTATTCTACAAATACCGGTTCAGGTCTTACATG 2001
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2066 GTTGCAGTAGCCGGTTTAGCTGGTTATATATTCTACAAATACCGGTTCAGGTCTTACATG 2125
Query 2002 GACTCGGAGATTATGACCATCATGTCACAGTATATGCCACTTGAGAGCCAAAGAGCTCGT 2061
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 GACTCAGAGATTATGACGATCATGTCACAGTATATGCCACTTGAGAGCCAAAGAGCTCGT 2185
Query 2062 GAAGTTCCATCAGAAGCTGAGCCTTTTACACTCTAAACTAATATTATATGACCAAAGTAA 2121
||||||||||||||||| |||||||||||||||||| || ||| || |||||||||||
Sbjct 2186 GAAGTTCCATCAGAAGCCGAGCCTTTTACACTCTAA--TAGTAT-AT--GACCAAAGTAA 2240
Query 2122 CCAAAACTTTCCTACACAAAGAAATGTTTGAGATCAATTAATGTACATATAAACTATACT 2181
|||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2241 CCAAAACTGTCATACACAAAGAAATGTTTGAGATCAATTAATGTACATATGAATTATACT 2300
Query 2182 GTAAAAATAAAAGAGTGAGATAGAGTTGTGTATATT--CATGGCaaaaaa---------- 2229
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2301 GTAAAAATAAAAGAGTGAGATAGAGTTGTGTATATTTTCATGGCAAAAAAATAAATAATT 2360
Query 2230 -g-atgtaaagaaacttttcaagaaaataaaacaaaaaTTGCTTT 2272
| ||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 2361 TGGATGTAAAGAGACTTTTGAAGAAAATAAAACAAATATTGCTTT 2405
Score = 300 bits (162), Expect = 5e-80
Identities = 202/220 (92%), Gaps = 7/220 (3%)
Strand=Plus/Plus
Query 1 TAACAAAAGTCTAACATCTTCC-AATTCTTTTCCATTTTCTAAAA-TATGTTTTGAGTGT 58
|||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
Sbjct 85 TAACAAAAGTCTAACATCTTCCAAATT-TTTTCCATTTTCTAAAATTATGTTTTGAGTTT 143
Query 59 GATTTTTCTTTTTCGTATTTATATGAAC--TAGTATGCTATCATCTTCAATCAGAAACAG 116
|| ||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 144 GACGTTTCTTTGT--TATTTATATAAACTATAGTATGCTATCATCTTCAATCAGAAACAG 201
Query 117 TTCCACAGAAGttttctgttttatcttttcctctgtttttgatttttctctctgaatctc 176
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 202 TTCCACAGAAGTTTTCTGTTTTAACTTTTCCTCTGTTTTTGATTTTTCTCTCTGAATCTC 261
Query 177 tccttcattttcCGGGGAAATAGTACAAGAGAGGTTTTCA 216
|||||||||| || |||||||||||| ||| ||||| |||
Sbjct 262 TCCTTCATTTCCCCGGGAAATAGTACCAGAAAGGTTATCA 301
> AT2G34940.1 | Symbols: VSR5, VSR3;2, BP80-3;2 | VACUOLAR SORTING
RECEPTOR 5 | chr2:14740468-14743417 FORWARD LENGTH=1989
Length=1989
Score = 566 bits (306), Expect = 4e-160
Identities = 1218/1646 (74%), Gaps = 111/1646 (7%)
Strand=Plus/Plus
Query 463 AAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTC-TTGATCGTGGAGGT-T 520
||||||||||| |||||| |||| ||||| ||||| | || ||||||||||| || |
Sbjct 273 AAAACCTTCAATACCAAGTCTCCTTATCCCAAAATTCT-CCTCATTGATCGTGGA-GTGT 330
Query 521 GTTACTTTGCCTTAAAAG-CGTGGCACGCTCAGCAAGCAGGCGCCGCGGCAGTTCTTGTG 579
|| |||||| ||| ||| ||| ||| || ||| | ||||| ||||| |||||| |
Sbjct 331 GTAACTTTG-CTTTGAAGATATGGAACGGACAACAATCCGGCGCAGCGGCTGTTCTTTTA 389
Query 580 GCGGATAATGTAGATGAGCCATTGTTAACAATGGATTCACCAGAGGAGAGCAAAGATGCA 639
|| ||||| | | |||||||||| ||||||||||| |||| | ||| ||||| |
Sbjct 390 GCAGATAACATTGTTGAGCCATTGATAACAATGGATACACCCCA--AGA-TGAAGAT-C- 444
Query 640 GATGGGTTCATAGA-GAAGCT-AACAATCCCATCGGTTTTAATCGATAAATCGTTCGGAG 697
|| || ||||| ||| | || |||||||| | ||||||| | || ||||| |
Sbjct 445 -CTGACTTTATAGACAAAG-TCAA-GATCCCATCAGCTTTAATCCTTCGCTCTTTCGGTG 501
Query 698 AT-GACTTAAGAAAAGGGT-TTCAGAA-AGGTAAAAACATAGTCTTGAA-ACTAGATTGG 753
|| | || ||| ||| | | || | || |||| | | || ||||||| | | ||||||
Sbjct 502 ATAGCCTCAAG-AAA-GCTCTT-AAAAGAGGTGAGGAGGTAATCTTGAAGA-TGGATTGG 557
Query 754 AGAGAATCTGTGCCTCATCCTGATCAGCGAGTAGAATATGAGCTGTGGACTAATAGC-AA 812
|| || ||| | || | |||||| || |||| || |||||||| ||| |||||| | ||
Sbjct 558 AGTGAGTCTATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCTAATA-CTAA 616
Query 813 CGACGAGTGTGGTGCACGGTGCGATGAACAGATGGATTTTGTCAAGAACTTTAAGGGTCA 872
|| || ||||||| || |||||| ||||||| ||||| | |||||||||||||| |
Sbjct 617 TGATGAATGTGGTGTACACTGCGATAAACAGATAGATTTCATTAAGAACTTTAAGGG-AA 675
Query 873 T-GCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACG-CCACATTATATCACATGG 930
| |||||||| || ||||||||||||||||| ||| | | || || || || | |||
Sbjct 676 TGGCTCAGATTCTTGAAAAAGGCGGTTATACTTTGTTCA-GACCTCACTACATTTCTTGG 734
Query 931 TTTTG-CCCTTTTCAGTTTATAAACAGTCCA-CATTGTAAGTCTCAGTGTATAAACCATG 988
|||| ||| || || || || | | || |||| | |||||||||||||||| |
Sbjct 735 GTTTGTCCC-AAAGAGCTTCTACTTAG-CAAGCAGTGTAGGACTCAGTGTATAAACCAAG 792
Query 989 GGAGGTATTGTGCTCCTGACCCTGAG-AACAATTTCAGAGAAGGTTATGAA-GGCAAAGA 1046
||||||||||||||| ||| || || || ||||| | ||| || ||| || || |||||
Sbjct 793 GGAGGTATTGTGCTCTTGATACTAAGCAAGAATTTGA-AGATGGATAT-AATGGGAAAGA 850
Query 1047 TGTTGTGCT-TGAGAATCTGAGACAGCTT-TGTGTGCATAGAGTTGCGAATGAG-AGTAG 1103
|| || | |||||||||||| ||| || ||||| |||| ||| || || ||| || |
Sbjct 851 CGTCGT-TTATGAGAATCTGAGGCAG-TTATGTGTTCATAAAGTAGCTAAGGAGAAG-AA 907
Query 1104 C-CGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTT--CATTCGCGATGTTCGATGAA 1160
| | |||||||||||||||| ||||| || |||||| || || | ||||| |||||
Sbjct 908 CAC-TTCTTGGGTTTGGTGGGACTATGTGACAGATTTTAACA-TC-AGGTGTTCTATGAA 964
Query 1161 GGAGAAGAAATTTAGCATAGAATGTGCTGAGAGC-ATCATCAAATCTAT--GAATTTACC 1217
||||||||||| |||| ||||||||| |||| | || | ||||| | | | | |
Sbjct 965 GGAGAAGAAATACAGCAGAGAATGTGCAGAGA-CTATTGTGGAATCTCTCGGGCTGT--C 1021
Query 1218 TATTGAGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACT-GAGAACCAAGTTC 1276
| |||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||
Sbjct 1022 TCTTGAGAAGATCAAGAAATGCATTGGTGATCCTGATGCTGATG-TAGAGAATGAAGTTC 1080
Query 1277 TGAGAATC-GAGCAAG-TATCCCAGATT-GGCCGAG-GTAACCGGGGAGAT-GTTACGAT 1331
| | || | ||| ||| | | | || || |||| || | || || || || ||||| ||
Sbjct 1081 TAA-AAGCCGAGGAAGCTTTTC-AG-TTAGGCCAAGAG-AATCGTGGC-ATTGTTACAAT 1135
Query 1332 ATTGCCAACATTAGTCATCAATAACGCCCAATATCGAGGGAGATTGGAGAGAACCGCTGT 1391
|| || |||||| | ||||| || || |||||||| || | | ||||||||||||| ||
Sbjct 1136 CTTTCCTACATTAATGATCAACAATGCTCAATATCGCGGTAAACTGGAGAGAACCGCGGT 1195
Query 1392 TCTAAAGGCGATATGCGCTGGATTCAACGAAACATCGGAACC-TCCCATTTGCTTAAACA 1450
|| ||||| ||||| | |||||||| |||| | | ||||| || || || || ||
Sbjct 1196 GCTGAAGGCTATATGTTCAGGATTCAAGGAAAGAACAGAACCGTCA-ATATGTTTGAATT 1254
Query 1451 CAGGTTTAGAGACAAATGAGTGCCTTGA-A-AACAATGGTGGTTGCTGGCAGGACACAAA 1508
||| | ||||||| ||||| || ||| | | || ||||| || || ||||| |||| |||
Sbjct 1255 CAGATATAGAGACCAATGAATGTCTT-ATAGAA-AATGGAGGATGTTGGCAAGACA-AAA 1311
Query 1509 -AGCAAACATAACCGCTTGTCAAG-ACACATTCAGAGGACGACTCTGCGAGTGTCCGGTT 1566
| | || |||| ||||| |||| ||||||| || ||| || | || ||||| ||||||
Sbjct 1312 GATCCAATGTAACTGCTTG-CAAGGACACATTTAGGGGAAGAGTATGTGAGTGCCCGGTT 1370
Query 1567 GTAAAAGGTGTTCAATATAAAGGCGACGGGTACACTTCATGTACACCTTATGGGCCTGCC 1626
|| | ||||||||||||||||| || || || || || || | ||||||||| |||||
Sbjct 1371 GTCGATGGTGTTCAATATAAAGGAGATGGTTATACCTCCTGCAAACCTTATGGACCTGCG 1430
Query 1627 AGGTGTACTATTAACAATGGAGGTTGCTGGTCTGACACAAGAAATGG-CTTAACTTTCTC 1685
|| ||| | || |||||||||| ||||||||||| || ||||| || || |||||||||
Sbjct 1431 AGATGTTCAATGAACAATGGAGACTGCTGGTCTGAAACCAGAAAGGGTCT-AACTTTCTC 1489
Query 1686 TGCTTGCTCAGACTCTGTGTC-TACTGGCTG-CAAATGTCCTGAAGGTTTCCAAGGCGAC 1743
| |||| |||||||| | | | | | || || | || ||| |||||||| || ||
Sbjct 1490 TTCTTGTTCAGACTCAGAGACAT-CAGGATGTCGT-TGCCCTCTAGGTTTCCTTGGAGAT 1547
Query 1744 GGTTTCACGTGTGAAGATATTAACGAATGTAAAGAGCGTTCGG-TGTGTCAATGT-AGCG 1801
||| | | |||||||| ||| | ||||| |||||| || | | ||| ||||| | |
Sbjct 1548 GGTCTAAAATGTGAAGACATTGATGAATGCAAAGAGAAATCAGCT-TGTAAATGTGAT-G 1605
Query 1802 GTTGCAGATGCAAGAACTCAT-GGGGTGGATACAAATGCAGTTGTTCTGGCGACAAGCT- 1859
| |||| |||||||||| || |||| ||||| |||||| |||||| | | | | |
Sbjct 1606 GCTGCAAATGCAAGAACA-ATTGGGGAGGATATGAATGCAAATGTTCTAACAATA-G-TA 1662
Query 1860 T-TACAT-AAACGATCAAGATACTTGTATAGAGAGAT-A--TGGATCCAA-AA-CAGCAT 1912
| ||||| ||| || | || |||||||| |||||| | |||||| || || ||| |
Sbjct 1663 TCTACATGAAA-GAAGAGGACACTTGTATCGAGAGAAGAAGTGGATC-AAGAAGCAG-AG 1719
Query 1913 GGTGGCTCACACTCT-TGATCCTAGCTATCGTCGCAG-TAGC-CGGTTTAGCTGGTTATC 1969
||| | ||||| | | || | ||| | | |||| | || | | ||||| || ||||
Sbjct 1720 GGTTGTTCACAAT-TGTGGTTCTAACCGCCATCGCGGGTATCTC--TTTAGGTGCTTATA 1776
Query 1970 TATTCTACAAATACCGG-TTCAGGTCTTACATGGACTCGGAGATTATGACCATCATGTCA 2028
|||||||||| |||| ||||| || |||||||| || ||||| || |||| |||||
Sbjct 1777 TATTCTACAAGTACCATCTTCAG-TCATACATGGATTCAGAGATCGTGTCCATTATGTCT 1835
Query 2029 CAGTATATGCCACTTGAGAGCCAAAG 2054
||||| || ||||| || ||||||||
Sbjct 1836 CAGTACATACCACTCGATAGCCAAAG 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112800624615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5