BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492879
Length=2678
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19960.1 | Symbols: KUP9, ATKUP9, HAK9, KT9 | K+ uptake perm... 2135 0.0
AT1G31120.1 | Symbols: KUP10 | K+ uptake permease 10 | chr1:111... 403 4e-111
> AT4G19960.1 | Symbols: KUP9, ATKUP9, HAK9, KT9 | K+ uptake permease
9 | chr4:10813548-10817070 FORWARD LENGTH=2804
Length=2804
Score = 2135 bits (1156), Expect = 0.0
Identities = 1364/1462 (93%), Gaps = 23/1462 (2%)
Strand=Plus/Plus
Query 1 TTTTGTTTAGCTTTATTATCCATTTCCATCAGAACCAGAGTTGTTCGTTGTTGCTCTGTA 60
||| |||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 38 TTTGGTTTAGCTTTTTTATCCAATTCCATCAGAACCAGAGTTGTTTGTTGCTGCTCTGTA 97
Query 61 ATAACAACAACTCGAGTCAATTC-TTATACTTAAGGaaaaaaaaaGTTTCAATTTTTGGT 119
|| | ||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 98 AT----A-TACTCGAGTCAA-TCTTTATACTTAAGGAAAAAAAAAGTTTCAATCTTTGGT 151
Query 120 CTCATCTCAGTCGAAAATTTCTCA-AAATAGTTATCGATTTCTAGGGCTCTGACTGGTTT 178
||||||||| |||||||| || | |||| || |||||||||||||||||||||||||||
Sbjct 152 TTCATCTCAGGCGAAAATTGCT-ACAAATGGTAATCGATTTCTAGGGCTCTGACTGGTTT 210
Query 179 TGATTAAAGGAATCAATTCAGGGGAGATTTCGAGTTCTGTTGTTGTTACAAAAATGGCGG 238
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 211 TGATTAAAGGAATCAATTCAGGGGA-ATTTCGAGTTC--TT-TTGTTACAAAAATGGCGG 266
Query 239 AAAGGGTCGAAG---CATCTGTAACAGAAGGAGAAAATACTATTGAAGAAAGAGAAGTAG 295
|||| ||||||| |||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 267 AAAGAGTCGAAGCATCATCTGTACCAGAAGGAGAAAATACAATAGAAGAAAGAGAAGTAG 326
Query 296 GAGCTATGTGGGAATTAGAGCAGAAACTTGATCAACCCATGGATGAAGAAGCTAATAAGC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GAGCTATGTGGGAATTAGAGCAGAAACTTGATCAACCCATGGATGAAGAAGCTAATAAGC 386
Query 356 TTAACAACATGTATAGTAGAGAAAAGGGCTTGTCAATGTTGATGCTTCTAAGGCTCTCTT 415
| |||||||||||||| ||| ||| ||| || ||||||||||||||||||||||||||||
Sbjct 387 TCAACAACATGTATAG-AGA-AAA-GGGATTATCAATGTTGATGCTTCTAAGGCTCTCTT 443
Query 416 TTCAAAGTTTAGGGATAGTTTATGGAGATTTAGGGACTTCTCCATTGTATGTGTTCTACA 475
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 444 TTCAAAGTCTAGGGATAGTTTATGGAGATTTAGGGACGTCTCCATTGTATGTGTTTTACA 503
Query 476 ATACATTCCCTGATGGAATTGATGATAGTGAAGATGTAATCGGAGCTCTTTCTTTGATCA 535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ATACATTCCCTGACGGAATTGATGATAGTGAAGATGTAATCGGAGCTCTTTCTTTGATCA 563
Query 536 TTTACTCTCTGTTGCTTATACCTCTCATCAAGTATGTGTTCATTGTCTGCAAAGCTAATG 595
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TTTACTCTCTTTTGCTTATTCCTCTCATCAAGTATGTGTTCATTGTCTGCAAAGCTAATG 623
Query 596 ATAATGGTCAAGGTGGGACTCTAGCGATATACTCTTTGCTTTGTAGACATGCTAAAGTGA 655
|||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||
Sbjct 624 ATAATGGTCAAGGTGGGACTTTAGCTATATATTCGTTGCTTTGTAGACATGCTAAAGTGA 683
Query 656 AACTAATCCCGAATCAGCACCGCAGTGATGAGGATCTCACGACTTATAGTCGAACTGTAT 715
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 684 AACTAATCCCGAATCAGCACCGTAGTGATGAGGATCTCACGACTTATAGTCGAACTGTAT 743
Query 716 CCGCTGAAGGGTCTTTTGCTGCTAAAACCAAGAAGTGGTTGGAGGGTAAAGATTGGAGGA 775
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 744 CCGCTGAAGGGTCTTTTGCTGCTAAAACCAAGAAATGGTTGGAGGGTAAAGAATGGAGGA 803
Query 776 AGAGAGCTCTT-TTGGTCGTTGTTCTTCTCGGGACTTGTATGATGATCGGTGATGGTATC 834
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 804 AGAGAGCTCTTCTTG-TCGTTGTTCTTCTCGGTACTTGTATGATGATCGGTGATGGTATC 862
Query 835 TTAACTCCAGCCATCTCCGTTCTTTCCGCAACTGGTGGGATCAAAATCATCAAACCAAAT 894
||||||||||| |||||||||||||| |||||||||||||||||| | | ||| |||||
Sbjct 863 TTAACTCCAGCTATCTCCGTTCTTTCAGCAACTGGTGGGATCAAAGTAAACAATCCAAAA 922
Query 895 ATGAGCGGCGATATCGTTGTGCTTGTGTCAATTGTCATTTT-AGTGGGATTGTTCTGTTT 953
||||||||||||||||| ||||||||| ||||||||||||| | | ||||||||| || |
Sbjct 923 ATGAGCGGCGATATCGTCGTGCTTGTGGCAATTGTCATTTTGA-TAGGATTGTTCAGTAT 981
Query 954 GCAACACTACGGTACAGACAAAGTCGGATGGCTCTTTGCGCCTATCGTGCTTATTTGGTT 1013
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 982 GCAACACTATGGTACAGACAAAGTCGGATGGCTCTTTGCACCTATCGTGCTTATTTGGTT 1041
Query 1014 CCTCTTCATTGGAGCCACTGGGTTATACAACATCTGCAAACATGACACAAGCGTTTTAAA 1073
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 1042 CCTCTTCATTGGAGCCACTGGGATGTACAACATCTGCAAGTATGACACAAGCGTTTTAAA 1101
Query 1074 AGCGTTTTCGCCCACATATATATACTTGTACTTCAAAAGACGAGGTCTAGATGGTTGGAT 1133
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1102 AGCGTTTTCGCCTACATATATATACTTGTACTTCAAAAGACGAGGTCGAGATGGTTGGAT 1161
Query 1134 TTCGCTTGGTGGCATTCTTCTCAGCATAACAGGCACGGAGGCACTCTACGCAGACATTGC 1193
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1162 ATCGCTCGGTGGCATTCTTCTCAGCATAACAGGCACGGAGGCACTATACGCAGACATTGC 1221
Query 1194 TTATTTCCCGTTACTAGCAATACAGCTCGCCTTTACGTTGTTTGTGTTCCCTTGTCTTCT 1253
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1222 CTATTTCCCCTTACTAGCGATACAGCTCGCCTTTACGTTTTTTGTGTTCCCTTGTCTTCT 1281
Query 1254 TCTAGCATACTGCGGACAAGCTGCGTATCTTGTAAATCATAAGGAACATTATCAAGACGC 1313
|||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1282 TCTAGCATACTGTGGACAAGCTGCTTATCTTGTGATTCATAAGGAACATTATCAAGACGC 1341
Query 1314 GTTCTATGCATCTATCCCGAATAGTGTATATTGGCCAATGTTTGTAGTCGCGACAGGAGC 1373
||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1342 GTTCTATGCATCTATCCCGGATAGTGTCTATTGGCCAATGTTTATAGTCGCGACAGGAGC 1401
Query 1374 TGCAATCGTCGGGAGCCAAGCTACGATCTCAGGGACTTATTCGATAATCAAGCAGGCCGT 1433
||| || || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1402 TGCTATTGTTGGGAGCCAAGCTACGATCTCCGGGACTTATTCGATCGTCAAGCAGGCCGT 1461
Query 1434 AGCTCATGGGTGTTTTCCTCGA 1455
|||||||| ||||||||||||
Sbjct 1462 GGCTCATGGATGTTTTCCTCGA 1483
Score = 1707 bits (924), Expect = 0.0
Identities = 1071/1141 (94%), Gaps = 14/1141 (1%)
Strand=Plus/Plus
Query 1550 GGACCGCGGTTGTTCTCGTGATGCTTGTGACCACATTGCTAATGGTGTTGATCATGCTGC 1609
|||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
Sbjct 1665 GGACTGCGGTTGTTCTCGTGATGCTTGTGACCACATTACTAATGGTGCTGATAATGCTAC 1724
Query 1610 TCGTGTGGCATTGCCACTGGATCCTTGTCCTTATATTCACCGTTCTCTCCCTCTTTGTGG 1669
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1725 TCGTGTGGCATTGCCACTGGATCCTTGTCCTTATATTCACCTTTCTCTCCTTCTTTGTGG 1784
Query 1670 AATTATCGTACTTCTCAGCCGTGATCTTTAAGATCGATGAAGGAGGATGGGTTCCGCTCA 1729
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1785 AGTTATCGTACTTCTCAGCCGTGATCTTTAAAATCGATGAAGGAGGATGGGTGCCGCTCA 1844
Query 1730 TCATAGCAGTGATATCTCTTCTCGTAATGTCAGTATGGCATTATGCAACTGTCAAGAAAT 1789
||||||||| |||||||||| | ||||||||||| |||||||| ||||| ||||||||||
Sbjct 1845 TCATAGCAGCGATATCTCTTTTAGTAATGTCAGTCTGGCATTACGCAACAGTCAAGAAAT 1904
Query 1790 ATGAGTTTGAAATGCACAGCAAAGTGTCCATGAGCTGGATACTCGGCCTCGGTCCCAGCC 1849
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1905 ATGAGTTTGAAATGCACAGTAAAGTGTCCATGAGTTGGATACTCGGCCTCGGTCCCAGCC 1964
Query 1850 TCGGGCTTGTCCGTGTCCCTGGGG-TCGGGTTAGTCTACACGGAGTTAGCAAGTGGTGTC 1908
||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 1965 TCGGGCTTGTCCGTGTCCC-GGGGATCGGGTTAGTCTACACGGAATTAGCAAGTGGTGTT 2023
Query 1909 CCTCACATTTTCTCTCATTTCATCACCAACCTCCCCGCAATTCACTCGGTTGTAGTCTTT 1968
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2024 CCTCACATTTTCTCTCATTTCATCACCAACCTCCCCGCGATTCATTCGGTTGTAGTCTTT 2083
Query 1969 GTCTGCGTCAAGTACCTTCCGGTTTACACCGTCCCTGAAGAAGAGAGGTTTCTTATGAAG 2028
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2084 GTCTGCGTCAAGTACCTTCCGGTTTACACCGTCCCTGAAGAAGAGAGGTTTCTTGTGAAG 2143
Query 2029 AGAATCGGACCAAAAACATTCCGAATGTTCCGCTGCGTAGCCAGATATGGTTACAAAGAT 2088
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 2144 AGAATCGGACCAAAAACATTCCGGATGTTCCGATGTGTAGCCAGATATGGTTACAAAGAT 2203
Query 2089 CTACACAAGAAAGACGATGATTTCGAGAACAAACTGCTGACTAACCTCTTCTCATTCATT 2148
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 2204 CTACACAAGAAAGACGATGATTTCGAGAACAAACTGCTGACTAAACTCTCCTCATTCATT 2263
Query 2149 CGAATCGAAACTATGATGGAGCCAGCTTCAAACTCAAGCACCTACAGCAGCACGTATTCC 2208
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2264 CGAATCGAAACTATGATGGAGCCAACTTCAAACTCAAGCACCTACAGCAGCACGTATTCC 2323
Query 2209 GTCAACCATACACAAGTTTCCACCGTAGACTTGATCCacaacaacaaccacaatagcaac 2268
|||||||||||||||| ||||||||||||||||||||||||||||||| || | | | ||
Sbjct 2324 GTCAACCATACACAAGATTCCACCGTAGACTTGATCCACAACAACAACAACCACAACCAC 2383
Query 2269 aacaacaacaTGGATATGTTCTCATCAATGGTGGACTACACGGTATCAACTTTAGACACG 2328
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2384 AACAACAACATGGATATGTTCTCATCGATGGTGGACTACACGGTATCAACTTTAGACACG 2443
Query 2329 ATAGTC-CCTGCTGATTCACCGCATAACGCGGTGAGTTTCAGTCAGGACAACACGATAGA 2387
||||| || ||||| |||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 2444 ATAGTTTCC-GCTGAATCACTGCATAACACGGTGAGTTTCAGTCAGGACAACACGGTAGA 2502
Query 2388 GGAGGAGGC-A-G-ATGAGTTGGAGTTTCTAAAGACTTGCAAAGAGTCAGGGGTTGTTCA 2444
|||||||| | | ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2503 GGAGGAGGAGACGGATGAGTTGGAGTTTCTAAAGACTTGTAAAGAGTCAGGTGTTGTTCA 2562
Query 2445 TATTATGGGGAACACTGTGGTGAAAGCAAGAAATGGATCATGGCTTCCAAAAAAGATTGC 2504
||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2563 TATAATGGGGAACACCGTGGTGAAAGCAAGAACTGGATCATGGCTTCCAAAAAAGATTGC 2622
Query 2505 GATTGATTATGTTTATGCATTTCTTGCTAAGGTTTGTAGGGAGAATAGTGTTATCTTACA 2564
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2623 GATTGATTATGTTTATGCATTTCTTGCTAAGATTTGTAGGGCCAATAGTGTTATCTTACA 2682
Query 2565 TGTCCCTCATGAAACCCTTTTAAACGTTGGACAAGTCTTTTATGTTTAGTTTC-ttttt- 2622
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2683 TGTTCCTCATGAAACCCTTTTAAACGTTGGACAAGTCTTTTATGTTTAGTTTAGTTTTTA 2742
Query 2623 tt-tttt--t--GTAAAACAATTACAGATAAAGGGGAATAAAGGGATACCAGATTTAAGA 2677
|| |||| | |||||||||||||||| |||||| |||||| |||||||| ||||||||
Sbjct 2743 TTATTTTGCTTTGTAAAACAATTACAGAGAAAGGGTAATAAAAGGATACCAAATTTAAGA 2802
Query 2678 T 2678
|
Sbjct 2803 T 2803
Score = 137 bits (74), Expect = 4e-31
Identities = 86/92 (93%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1456 ATCTATTGCCCTGATATTAATTGGATACTCATGCTCGGCTGCATCGCGGTTACTGCTAGT 1515
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1523 ATCTATTGTCCTGATATTAACTGGATACTCATGCTCGGCTGCATCGCGGTTACTGCTAGT 1582
Query 1516 TTCAAGAATCAAAGCCAAATCGGAAATGCATA 1547
||||| || || |||||||| |||||||||||
Sbjct 1583 TTCAAAAAGCAGAGCCAAATAGGAAATGCATA 1614
> AT1G31120.1 | Symbols: KUP10 | K+ uptake permease 10 | chr1:11104301-11107763
REVERSE LENGTH=2867
Length=2867
Score = 403 bits (218), Expect = 4e-111
Identities = 520/662 (79%), Gaps = 36/662 (5%)
Strand=Plus/Plus
Query 1474 AATTGGATACTCATGCTCGGCTGCATCGCGGTTACTGCTAGTTTCAAGAATCA-AAGCCA 1532
|||||||| |||||| || ||||| || || |||||| | |||||||| || || |||
Sbjct 1681 AATTGGATCCTCATGATCCTTTGCATAGCTGTCACTGCTGGATTCAAGAACCAGAA-CCA 1739
Query 1533 AATCGGAAATGCATATGGGACCGCGGTTGTTCTCGTGATGCTTGTGACCAC-ATTGCTAA 1591
|| |||||||| |||||||| || ||||| | || ||||| ||||| || || || |
Sbjct 1740 GATAGGAAATGCTTATGGGACTGCAGTTGTGATTGTCATGCTCGTGACAACGCTT-CTCA 1798
Query 1592 TGGTGTTGATCATGCTGCTCGTGTGGC-ATTGCCACTGGATCCTTGTCCT-TATATTCAC 1649
|| || |||||||| | || || |||| | ||||| ||| | || ||||| | |||| ||
Sbjct 1799 TGATGCTGATCATGATACTTGTTTGGCGA-TGCCATTGGGTTCTAGTCCTCT-TATTTAC 1856
Query 1650 -CGTTCTCTCCCTCT-TTGTGGAAT-TATCGTACTTCTCAGCCGTGATCTTTAAGATCGA 1706
| |||| ||||| | ||||||||| | | |||||||| || ||| |||| ||| | |
Sbjct 1857 TC-TTCTATCCCT-TGTTGTGGAATGCA-CTTACTTCTCGGCGGTGCTCTTCAAGGTTAA 1913
Query 1707 TGAAGGAGGATGGGTTCCGCTCATCATAGCAG-TGATATCTCTTCTCGTAATGTCA-GTA 1764
|||| |||||||||||||| |||| || | || | |||| || | |||| | ||
Sbjct 1914 CCAAGGTGGATGGGTTCCGCTGGTCATTGCGGCTG-CGTTTCTTGTCATCATGT-ATGTT 1971
Query 1765 TGGCATTATGCAACTGTCAAGAAATATGAGTTTGAAATGCACAGCAAAGTGTCCATGAGC 1824
|||||||||| ||| |||||| ||||||||||||||||| || ||||| |||||| ||
Sbjct 1972 TGGCATTATGGAACCCTCAAGAGGTATGAGTTTGAAATGCATAGTAAAGTCTCCATG-GC 2030
Query 1825 -TGGATACTCGGCCTCGGTCCCAGCCTCGGGCTTGTCCGTGTCCCTGGGGTCGG-GTTAG 1882
||||| ||||| |||||||| ||||| || ||||||||||| |||||| | || || |
Sbjct 2031 TTGGATTCTCGGACTCGGTCCTAGCCTTGGTCTTGTCCGTGTTCCTGGGATTGGCCTT-G 2089
Query 1883 TCTACACGGAGTTAGCAAGTGGTGTCCCTCACATTTTCTCTCATTTCATCACCAACCTCC 1942
| ||||| ||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 2090 TTTACACCGAGCTAGCTAGTGGAGTCCCTCACATTTTCTCTCATTTCATCACAAACCTGC 2149
Query 1943 CCGCAATTCACTCGGTTGT-AGTCTTTGTCTGCGTCAAGTACCTTCCGGTTTACACCGT- 2000
| |||| |||||| || || | ||||||||||||||||| ||||||| || ||||||||
Sbjct 2150 CGGCAACTCACTCTGTCGTGA-TCTTTGTCTGCGTCAAGAACCTTCCCGTATACACCGTT 2208
Query 2001 CCCTGAAGAAGAGA-GGTTTCTTATGAAGAGAATCGGACC-AAAAACATTC-CGAATGTT 2057
||| | ||||| | |||| ||| | || ||||||||||| |||||| ||| | | ||||
Sbjct 2209 CCCC-AGGAAGA-ACGGTTCCTTGTAAAAAGAATCGGACCCAAAAACTTTCAC-A-TGTT 2264
Query 2058 CCGCTGCGTAGCCAGATATGGTTACAAAGATCTA-CACAAGAAAGACGATGA-TTTCGAG 2115
||||||||| || || || || |||| ||| || ||||||||||| || || ||| |||
Sbjct 2265 CCGCTGCGTTGCGAGGTACGGATACAGAGA-CTTGCACAAGAAAGATGACGACTTT-GAG 2322
Query 2116 AA 2117
||
Sbjct 2323 AA 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132992565893
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5