BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492888 Length=1113 Score E Sequences producing significant alignments: (Bits) Value AT4G19820.1 | Symbols: | Glycosyl hydrolase family protein wit... 1177 0.0 AT4G19750.1 | Symbols: | Glycosyl hydrolase family protein wit... 159 4e-38 AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein wit... 150 2e-35 AT4G19760.1 | Symbols: | Glycosyl hydrolase family protein wit... 135 7e-31 AT4G19720.1 | Symbols: | Glycosyl hydrolase family protein wit... 100 2e-20 > AT4G19820.1 | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10767436-10768614 REVERSE LENGTH=1101 Length=1101 Score = 1177 bits (637), Expect = 0.0 Identities = 788/858 (92%), Gaps = 22/858 (3%) Strand=Plus/Plus Query 1 ATGTCTTCCTCAAAACTCATCATCTCCATCACTTTCTTCTTATCTCTCCTCCTACGATTC 60 ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTCCACAAAACTCAT--T-TCCATCACTTTCTTCTTATCTCTCCTCCTACGATTC 57 Query 61 TCCTCCGCCCAAACCGCCGTGAAAGCTACGTACTGGTTTGCGGAGAGTGAATCTCCGGTC 120 |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | Sbjct 58 TCCTCCGCCCAAACAGTCGTGAAAGCTACCTACTGGTTTGCGGAGAGTGAATCTCCGTTG 117 Query 121 GCGGACATTGACTCATCTCTCTTCACCCACCTATTTTGCGCTTTCGCTGACATCAACCCT 180 || | |||||||||||||||||||| ||||| |||||||||||||| || |||||| || Sbjct 118 GCCCAAATTGACTCATCTCTCTTCACTCACCTTTTTTGCGCTTTCGCCGATATCAACACT 177 Query 181 CTAACATATCAAGTCATTGTCTCCTCCAGGAACAAACCCAAATTCTCCACCTTTACACAA 240 ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct 178 CTAACCTATCAAGTCATTGTCTCCTCCAGAAACAAACCCAAATTCTCAACATTTACACAA 237 Query 241 ACCGTCCAACGGAGAAACCCTACCGTGAGAACCCTTTTGTCTATCGGCGGTGATTTCACA 300 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 238 ACCGTCCGACGGAGAAACCCTACCGTGAAAACCCTTTTGTCTATCGGCGGTGATTTCACA 297 Query 301 TATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAATTGTTCATT-GC 359 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 298 TATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAACTGTTCATTAG- 356 Query 360 TTCTTCTATTAATCTCGCTAGATCATATGGATTCCACGGTCTCGATCTATATTGGAAGTA 419 |||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||||| Sbjct 357 TTCTTCTATTAAGCTCGCTAGATCGTGCGGATTCCACGGTCTCGATCTAAATTGGAAGTA 416 Query 420 CCCGAGCACTACGACAGAGATGGACGATTTCGGGAAGCTACTTCAAGAATGGCGATGGGC 479 ||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 417 TCCGAGCATTACGACGGAGATGGACAATTTCGGGAAGCTACTTCGAGAATGGCGATTGGC 476 Query 480 GGTT-ATAGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGATGGCTGCGGTTT 538 |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 477 GGTTGA-AGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGACGGCTGCGGTAT 535 Query 539 TCTACTCCTA---TT------CGGTACTG-CACCCGGTTCAA-GCCGTTGCCGATAGCTT 587 |||||||||| || |||| || ||||| ||| || ||||||||||||||||| Sbjct 536 TCTACTCCTACAGTTATTATTCGGT-CTTACACCCAGTT-AATGCCGTTGCCGATAGCTT 593 Query 588 GGATTGGGTTAATCTTGTTGCCTATGATTTTTACGATTCGGGTTCGTCTAGAGTAACTTG 647 ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| Sbjct 594 AGATTGGGTTAATCTTGTTGCCTACGATTTTTATGAATCGGGTTCGTCTAGAGTAACTTG 653 Query 648 CTCACCAGCTCCTCTCTACGATCCTATAACCGCAGGTCCAAGCTGCGACGCCGGAGTGAG 707 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 654 CTCACCAGCTCCTCTCTACGATCCTATAACCACAGGTCCAAGCGGCGACGCCGGAGTGAG 713 Query 708 AGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCAT-ACTACG 766 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 714 AGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATTA-TACG 772 Query 767 GCTACGCGTGGCGTCTCACAGACTCCAAGAATCATAACTACTACGCTAATAGCAGCGGAC 826 ||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 773 GCTACGCATGGTGTCTCACAGACGCCAAGAATCATAACTACTACGCGAATAGCAGCGGAC 832 Query 827 CAGCGATATCACCTGACG 844 | ||||||||||| |||| Sbjct 833 CGGCGATATCACCAGACG 850 Score = 303 bits (164), Expect = 2e-81 Identities = 199/216 (92%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 844 GTGGGTAACAAAGCAATGAAGGTTTATAGTTCGACGTTGGTCCAGAACTACTGTTACGCC 903 |||| ||||||||||| || |||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 886 GTGGATAACAAAGCAACGATGGTTTATAATTCGAATTTGGTTCAGAATTACTGTTATGCC 945 Query 904 AAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGTTACT-AAAGTGAGATACGC 962 |||||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||| Sbjct 946 AAGAAGACTTGGATTGGTTACGATGATAATCAAAGTATTGTTA-TGAAAGTGAAATACGC 1004 Query 963 TAAGCAGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATTCTCT 1022 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1005 TAAGCAAAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACGATAATTCTCG 1064 Query 1023 TCTATCTCGTGCAGGTTCGGTTTTATCCCAATTCTA 1058 |||||||||||||||||||||||||| ||||||||| Sbjct 1065 TCTATCTCGTGCAGGTTCGGTTTTATTCCAATTCTA 1100 > AT4G19750.1 | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10745682-10747127 REVERSE LENGTH=1089 Length=1089 Score = 159 bits (86), Expect = 4e-38 Identities = 135/158 (85%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 891 CTACTGTTACGCCAAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGT-TACTA 949 ||| ||||||| | || || |||||||||||||||||||||||||||||||| | | | Sbjct 906 CTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTCC-A 964 Query 950 AAGTGAGATACGCTAAGC-AGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCT 1008 |||||||||||||||||| | | |||| | |||||||| ||||||||||| |||||||| Sbjct 965 AAGTGAGATACGCTAAGCTAAA-AGGTTTGCTTGGTTACTTCTCGTGGCATGTTGGAGCT 1023 Query 1009 GACTATAATTCTCTTCTATCTCGTGCAGGTTCGGTTTT 1046 |||||||||| | ||| ||||||||||||||| |||| Sbjct 1024 GACTATAATTGTGGTCTTTCTCGTGCAGGTTCG-TTTT 1060 > AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10763934-10765753 REVERSE LENGTH=1357 Length=1357 Score = 150 bits (81), Expect = 2e-35 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 912 TTGGATTGGTTACGATGATAATCAGAGTATTGTTACTAAAGTGAGATACGCTAAGCAGAG 971 ||||||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| Sbjct 960 TTGGATTGGTTACGATGATAATCAGAGTATTGTGACGAAAGTTAGATATGCCAAGCAGAG 1019 Query 972 AGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATTCTCTTCTATCTCG 1031 |||| | |||||||| ||||||||||| | || |||||| |||||||| ||||||||| Sbjct 1020 AGGTTTGCTTGGTTACTTCTCGTGGCATGTCGGTGCTGACGATAATTCTGGTCTATCTCG 1079 Query 1032 TGCAGGTTC 1040 ||||| ||| Sbjct 1080 TGCAGCTTC 1088 > AT4G19760.1 | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10750381-10752028 FORWARD LENGTH=1110 Length=1110 Score = 135 bits (73), Expect = 7e-31 Identities = 109/126 (87%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 913 TGGATTGGTTACGATGATAATCAGAGTATTGT-TACTAAAGTGAGATACGCTAAGCAGAG 971 |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| | Sbjct 958 TGGATTGGTTACGATGATAATCAGAGTATTGTGTAC-AAAGTGAAATACGCTAAGTTTAC 1016 Query 972 AGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATT-CTCTTCTATCTC 1030 ||||| |||||||| ||||||||||| |||||||||||||||||| | | || |||| Sbjct 1017 TGGTCTGCTTGGTTACTTCTCGTGGCATGTTGGAGCTGACTATAATTGCGGT-CTCTCTC 1075 Query 1031 GTGCAG 1036 |||||| Sbjct 1076 GTGCAG 1081 > AT4G19720.1 | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10730363-10731750 REVERSE LENGTH=1147 Length=1147 Score = 100 bits (54), Expect = 2e-20 Identities = 482/675 (71%), Gaps = 84/675 (12%) Strand=Plus/Plus Query 133 TCATCTCTCTTCACCCACCTATTT-TGCG-CTTTCGCTGACATCAACCCTCTA-A-CATA 188 ||| |||||||||| || || ||| |||| |||| || ||| | |||||| | | || | Sbjct 158 TCAACTCTCTTCACTCATCT-TTTCTGCGCCTTT-GCCGACCTTGACCCTC-AGACCA-A 213 Query 189 TCA-AGTCATTGTCTCCTCCAG-GAACAAACCCA-AATTCTCCACCTTTAC-ACAAACCG 244 || ||| |||||||| | | || || | | ||||||||| ||| || | ||| || Sbjct 214 -CAGCGTCGTTGTCTCCGGC-GCTCACGAA-CAAGAATTCTCCAACTTCACTA-AAATCG 269 Query 245 TCCAACG--GAGAAACCCTAC-CGTG-AGAACCCTTTTGTCTATCGGCGG-TGATTTCAC 299 | ||| | || ||||||| | |||| | |||||| ||||| |||||||| || | | Sbjct 270 T-CAA-GAAGAAAAACCCT-CACGTGCA-AACCCTCTTGTCCATCGGCGGAAGA-AACGC 324 Query 300 ATATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAATTGTTCATT-G 358 | |||| | |||||||||||||||||||||||||||||| ||| | |||| |||||| | Sbjct 325 AGATAAATCCGCGTTTGCGTCTATGGCAAGTAACCCCACTTCTCGTAAATCCTTCATTTG 384 Query 359 CTTCTTCTAT-TA-ATCTCGCTAGAT-CATATGGATTCCACGGTCTCGATCTA-TATTGG 414 | || | || | | | ||||||| | ||| |||| |||| || ||||| | |||| Sbjct 385 GT-CTGCGATCTCCAGC--GCTAGATAC-TATCGATTTGACGGACTTGATCTGGT-TTGG 439 Query 415 AAGTACCCGAGCACTACGACA-G-AGATG-GACGA-TTTCGGG-AAGCTACTTCAAGAAT 469 |||||||| | | | || | ||||| || | ||| || || |||||| || ||| Sbjct 440 AAGTACCCAAA-AG-ATGATGTGGAGATGAGAA-ACTTT-GGTCAA-CTACTTGAACAAT 494 Query 470 GGCGATGG-GCGGTTATAGCA-GAGGCTAGAA-GCAGCGGTA-AACCGCGTTTGCTTTTG 525 ||||| | ||| || || | || ||| ||| ||| || | || || |||||| ||| Sbjct 495 GGCGA-GAAGCGATTG-AGGACGATGCT-GAACGCACCGAAAGAAT-GCCTTTGCTATTG 550 Query 526 ATGGCTGCGGTTTTCTACTC-CTA-TT--CGGTACTG---C--ACCCGGTTCAAGCCG-T 575 | ||||||||||| |||||| | || || | ||| | |||| ||| | | | Sbjct 551 ACGGCTGCGGTTTACTACTCTCCGGTTTACGATTCTGTTTCCTACCCAATTCGGGA-GAT 609 Query 576 TGCCGATAGCTTGGATTGGGTTAATCTTGTTGCCTATGATTTTTACGATTCGGGTTCGTC 635 | | | |||||||||||||| ||| ||||||||||||| ||| | | ||| || Sbjct 610 TAAAAAAAAATTGGATTGGGTTAACCTTATTGCCTATGATTTCTAC--T-C---TTCATC 663 Query 636 TAGAGTAACTTGCTC-ACCAGCTC-CTCTCTACGATCC-T-ATAACC-GCA-GGTCCAAG 689 | | | ||| || ||| || | |||| | ||||| | | |||| | | |||||| | Sbjct 664 CACAACCA-TTGGTCCACCCGC-CGCTCTGTTTGATCCCTCA-AACCCGAAAGGTCCATG 720 Query 690 CTGCG-ACGCCGGAGTGAGAGCGTGGACTCAAG-CTGGACTTCCGGCGAAGAAAGCAGTC 747 || | || || ||| || ||||| | ||| | |||||||||||||||||||||||| Sbjct 721 -TGGGGACTATGGTTTGAAAGAGTGGATT-AAGGCCGGACTTCCGGCGAAGAAAGCAGTC 778 Query 748 TTGGGATTTCCATAC 762 ||||||||||||||| Sbjct 779 TTGGGATTTCCATAC 793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54567992415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5