BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492898
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19670.1 | Symbols: | RING/U-box superfamily protein | chr4... 2789 0.0
> AT4G19670.1 | Symbols: | RING/U-box superfamily protein | chr4:10699238-10701452
REVERSE LENGTH=1854
Length=1854
Score = 2789 bits (1510), Expect = 0.0
Identities = 1717/1817 (94%), Gaps = 13/1817 (1%)
Strand=Plus/Plus
Query 175 GATCCGATTTGGGTTTGC-TTAGTTTGTTGCTAAGTTAAGAAAGTTTGTACCTTTTTGTA 233
|||||||| ||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 28 GATCCGATATGGGTTT-CATTGGTGTGTTGCTAAGTTAAGAAAGTTTGTACCTTTTTGTA 86
Query 234 GTTTAG-TTGGGTTGTTGCCAAACATGGAAAATCAAGAGGATTCTTGTGGATGTGAGGAG 292
|||||| | || ||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 87 GTTTAGATAGGTTTGTTTCCAGACATGGAAAATCAAGAGGATTCTTGTGAATGTGAGGAG 146
Query 293 CTTCCATTGAATCA-TATAGGAGATGAGGAAGAGTTTAGAAGCTGTTGTGGTGATGAAGA 351
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 147 CTTCCATTGAATCACT-TAGGAGATGAGGAAGAGTTTAGAAGTTGTTGTGGTGATGAAGA 205
Query 352 AGTTTGGTTAAAGGAG-AGTGATGATACAGTTAAAGTTGCAGAGGAGGAGAAAAAAGATG 410
| |||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||
Sbjct 206 ACTTTGGTTAAAGG-GTAGTGATGATATAGCTAAAGTTGTAGAGGAGGAGAAAAAAGATG 264
Query 411 AACTTGATGATGAGTTCTCTGTTAAGGTTTTCTTTAAAGGAGTTTCGATATCCGAAAAAG 470
| |||||||||||||||||||||||| | ||||||||||||| ||||||| ||||| ||
Sbjct 265 ATCTTGATGATGAGTTCTCTGTTAAGATGGTCTTTAAAGGAGTCTCGATATTCGAAAGAG 324
Query 471 GAGATTCGGGTTCCGGTTACTCGGGAATTGGTGTTGTGTTGGAGAGATCTGGAGATTTTG 530
|||||| |||||| ||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 325 GAGATTTGGGTTCTGGTTATTCGGGAATTGGTGTTGTGTTGGAGAGGTCAGGAGATTTGG 384
Query 531 AGTTGATTCAGGTTCAGAAGAAGTTGGATTTTTATGCT-GAAGAGTCTGTAGCTAACTAT 589
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 385 AGTTGATTCAGGTTCAGAAGAAGTTGGATTTTTATG-TCGAAGAGTCTGTAGCTAACTAT 443
Query 590 TTGGCTCTTATGGATGGTCTTGAAGTAGCTTTACAGAATAATCTCCCCTCTGTGGTTGCT 649
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 444 TTAGCTCTTATGGATGGTCTTGAAGTAGCTTTACAGAACAATCTCAGCTCTGTGGTTGCT 503
Query 650 GTAACCGACTCCGAATTGCTCTATAATCAGATAACTCGTGAGGAGCAGCTCGAGATCCCT 709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GTAACCGACTCCGAGTTGCTCTATAATCAGATAACTCGTGAGGAGCAGCTCGAGATCCCT 563
Query 710 CTTTTGGTAGCTCTGAGAGAAAGGGTATTGGAGAAAACAAGTAACCTTGATGGGTTTGTT 769
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 564 CTTTTAGTAGCTCTGAGAGAAAGGGTATTGGAGAAAACAAGTAACCTTAATGGGTTTGTT 623
Query 770 CTAAAGCTTGCTCCTTTCTGTGATCTCGATGAAGCTCTAAGCTTGGCTCAAGTAGCGGTA 829
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 624 CTAAAGCTTGCTCCTTTCTGTGATCTTGATGAAGCTCTAAGCTTGGCTCAAGTAGCGGTA 683
Query 830 GGAATCGTGTCTTCTAATCTCGATGGGGATAAACCAACCGAGAACTGCTCGATCTGCTGT 889
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 684 GGAATCGTGTCTTCTAATCTTGATGGGGATAAACCGATCGAGAACTGCTCGATCTGCTGT 743
Query 890 GAAGACCGTCAGTCTGAGATGATGCTAACATTGAAGTGCACTCACAAATTCTGTTCGCAC 949
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 744 GAAGACCGTCAGTCTGAGATGATGCTATCATTGAAATGCACTCACAAATTCTGTTCGCAC 803
Query 950 TGTATGAAAACATATGTCGAAGGGAAACTACAGTCTTCGGAAGTTCCCATCAGGTGTCCT 1009
|| |||||||| || || ||||||||| || || |||| || ||||||||||||||||||
Sbjct 804 TGCATGAAAACGTACGTTGAAGGGAAAGTAAAGACTTCAGAGGTTCCCATCAGGTGTCCT 863
Query 1010 CAAGTGCAATGCAAGCATTATCTCTCAGCCA-CAGAATGCAAATCGTTTCTGCCCGTTGC 1068
|||||||||||||||||||||||||||| || | |||||||||||||| || ||||| |
Sbjct 864 CAAGTGCAATGCAAGCATTATCTCTCAG-CAGCGGAATGCAAATCGTTCCTTCCCGTCAC 922
Query 1069 TACTTTCAAATCATTCGAGGAAGCAAATGTGCGTAGTAAGAACAATGGCAAGATTTACTG 1128
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 923 TACTTTCAAATCATTCGAGGAAGCAAATGTGTGTAGTAAAAACAATGGGAAGATTTACTG 982
Query 1129 CCCATATCCCAATTGCACTTTTCTATTAGACCCGCAAGAATGTCTATCATCAGGAAGGGC 1188
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 983 CCCATATCCCAATTGCTCTTTTCTGTTAGACCCGCAAGAATGTCTATCATCAGGAAGGGC 1042
Query 1189 AAGCTCAAGCTCGTCTACTCAGTCAGAGAATAGCTGCTGTGTGGAGTGTCCGGTCTGTGA 1248
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1043 TAGCTCAAGCTCGTCTACTCAGTCAGAGAATAGCTGCTGTGTGGAGTGTCCAGTCTGTGA 1102
Query 1249 GAGGTTTGTTTGTGTAGACTGTGGTGTTCCTTGGCATGCTTCTATGAGCTGTGAAGAGTT 1308
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GAGGTTTGTGTGTGTGGACTGTGGTGTTCCTTGGCATGCTTCTATGAGCTGTGAAGAGTT 1162
Query 1309 TCAGATTCTTCCGGTTGATGAAAGATATCCAGATGATATTACATTGCATCGCTTGGCAAG 1368
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1163 TCAGATTCTTCCAGTTGATGAAAGATACCCAGATGATATTACATTGCATCGCTTGGCAAG 1222
Query 1369 GTATAAGAGGTGGAGACGATGTCAGCAATGCCGTATAATGATCGAGCTTGCTCAAGGCTG 1428
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GTATAAGAGGTGGAGGCGGTGTCAGCAATGCCGTATAATGATCGAGCTTGCTCAAGGCTG 1282
Query 1429 CAACCACATGACTTGCCGGTGCGGGCACGAGTTTTGCTACTCGTGTGGAGTAGAGTACAG 1488
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 1283 CAACCACATGACTTGCCGATGCGGGCATGAGTTTTGCTACTCGTGTGGAGCAGAGTACAG 1342
Query 1489 AGAAGGGCAACAGACTTGCACTTGTGCTTTTTGGGACGATGACGAAGAAGATCAAGAAAA 1548
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1343 AGAAGGGCAACAGACTTGCACGTGTGCTTTTTGGGACGATGATGAAGAAGAACAAGAAAA 1402
Query 1549 CTCAGTTGAGGAACACACAATTCAAGAAGTTGAGCAATGGCCTTGGGACACATTTAACTC 1608
| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CGCAGTAGAGGAAAACACAATTCAAGAAGTTGAGCAATGGCCTTGGGACACATTTAACTC 1462
Query 1609 AATTCCAACTGTAATGGACGCTTACTCAGAGCAAGAAAGATCTCAGCTTGCTCTGATCCA 1668
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AATTCCAACTGTAATGGACGCGTACTCAGAGCAAGAAAGATCTCAGCTTGCTCTGATCCA 1522
Query 1669 AAGGTTCTTAGCAGGTGGAGGGTTTAGTCTCAGTGATCACCATACTTCTTATCAGTCACC 1728
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1523 AAGGTTCTTAGCAGGTGGAGGGTTTAGTCTCAGTGATCACCATACTACTTATCAGTCACC 1582
Query 1729 GCCGCCTCCATGTACAGAGTCATCATATGTTGAAGCCGCCATGAAAGATCTTCATCAGCT 1788
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1583 GCCGCCTCCATGTACAGAGTCATCATATGTTGAAGCCGCAATGAAAGATCTTCATCAGCT 1642
Query 1789 TCCTTGGCTTGAGAGGTTTGTGTCTGTTATAAGTGATGATTACTATGAAGAGTATAATAG 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TCCTTGGCTTGAGAGGTTTGTGTCTGTTATAAGTGATGATTACTATGAAGAGTATAATAG 1702
Query 1849 CCAGTGAAAGGAGTAGAATGGTAATTTAATAGCTTTGAGGATTCGGTTTGGTTTGGTTCG 1908
|||||||||| |||||||| ||||||||||||| |||||||| ||| ||||||||||||
Sbjct 1703 CCAGTGAAAGTAGTAGAATTGTAATTTAATAGCCTTGAGGATCCGGCTTGGTTTGGTTCA 1762
Query 1909 GCGAGGCCAAACGAGAGTATCTCGCTCTCGAAAGAAATTGTTGGG-GGGTTTTTAGATTC 1967
| ||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||
Sbjct 1763 GAGAGGCCAAACGAGAGTATCTCACTCTCGAAAGTAATTGTTGGGAGGGTTTT-AGATTC 1821
Query 1968 TTGATGAACTCAAACAA 1984
|||||||||||||||||
Sbjct 1822 TTGATGAACTCAAACAA 1838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98292667110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5