BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492904
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ... 1245 0.0
AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ... 756 0.0
> AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B,
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family
protein | chr4:10687198-10689617 REVERSE LENGTH=1014
Length=1014
Score = 1245 bits (674), Expect = 0.0
Identities = 862/944 (91%), Gaps = 47/944 (5%)
Strand=Plus/Plus
Query 43 TGTCTCCGTCTTCTTTTGATCTTCAATCTCAGTTTTGAGCTGAAGATTATCG----G-CA 97
|||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 83 TGTCTCCGTCGTCTTTTGATCTTCAATCTCAGTTTTGAGCTGAAGATTATCGTATCGACC 142
Query 98 TCCGATTCTCTTCAGATCCATAAT-CATGGCTGCAGCTGGAAACAAGAGCATTAACGCCA 156
| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 143 TGCGATTCTCTTCAGATCGATAATCCATGGCTGCAGCTGGAAACAAGAGCATTAACGCCA 202
Query 157 AATTGGTGTTACTTGGAGATGTTGGAGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCA 216
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 203 AATTGGTGTTGCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCA 262
Query 217 AAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACAT 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 263 AAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGT 322
Query 277 TAGCTGTCAACGATGCTACTGTCAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGT 336
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 323 TAGCTGTGAACGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGT 382
Query 337 ACCATAGTTTGGCTCCAATGTACTACAGGGGTGCTGCTGCTGCAATCATTGTCTTTGATG 396
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 383 ACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATG 442
Query 397 TTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAG 456
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAG 502
Query 457 GTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGA 562
Query 517 AGGTGACTGCAGAGGAGGCACAAACATATGCTCAAGAAAACGGTCTTTTCTTCATGGAAA 576
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 563 AGGTGACAGCAGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAA 622
Query 577 CATCAGCAAAAACCGCCACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTAC 636
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CTTCAGCAAAAACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTAC 682
Query 637 CGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTCCCAGACAGGGCCATGGATA 696
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 683 CGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGATA 742
Query 697 GGGCAGTGAGCTCATCTTGTTGTGCTTAGTTATAT----------C------T-CT-T-A 737
||||||||||||||||||||||||||||||||||| | | || | |
Sbjct 743 GGGCAGTGAGCTCATCTTGTTGTGCTTAGTTATATTGTGTAATGGCACACACTTCTCTTA 802
Query 738 AAAAGAAATCTTTTGGTCAGTGACTTTTGAAGTTATGGACTTCTGTGTTTGCGTTTCTTT 797
|||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 803 AAAAGAGATCTTTTGGTCA----CTTTA-AAGTTATGGACTTCTGTGTTTGCGTCTCTTT 857
Query 798 GCTTTGTTTTGCGTATTTGAGATTTGATCTCCACTCTTTTGTAAATAAATCTAATACTCA 857
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 858 GCTTTGTTTTACGTATTTGAGATTTGATCTCCACTATTTTGTAAATAAATCTAATACTCA 917
Query 858 TGCGTGAA--AAGC-AAGTTTC-T-ATAAATCTATGGATCCAGTTGTCTTAACACAAATA 912
| | || || | |||| | | | ||||||||||| ||||| |||| ||||||
Sbjct 918 A-C-T-AAGTAA-CTAAGTG-CGTGAGGGGGCTATGGATCCATTTGTCATAACGCAAATA 972
Query 913 TTT-CAAGTTATAGAATTAGAAACTCTAAAATAAACTCAAACAT 955
||| |||||||||||| | |||||||||||||||||||||
Sbjct 973 TTTTCAAGTTATAGAA--A----CTCTAAAATAAACTCAAACAT 1010
Score = 78.7 bits (42), Expect = 1e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 GAGGAGGAGGAGATTGGTTGTTGTTGACGACGCGTTTCCGCT 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GAGGAGGAGGAGATTGGTTGTTGTTGACGACGCGTTTCCGCT 58
> AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1,
ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244266-18246450
FORWARD LENGTH=1222
Length=1222
Score = 756 bits (409), Expect = 0.0
Identities = 608/702 (87%), Gaps = 21/702 (3%)
Strand=Plus/Plus
Query 119 AATCATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATG 177
|||||||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||
Sbjct 226 AATCATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATG 284
Query 178 TTGGAGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCC 237
|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
Sbjct 285 TTGGAGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTC 344
Query 238 AGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACATTAGCTGTCAACGATGCTACTG 297
||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||
Sbjct 345 AGGAATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTG 404
Query 298 TCAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGT 357
| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 405 TGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGT 464
Query 358 ACTACAGGGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTG 417
||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||| ||||
Sbjct 465 ACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTG 524
Query 418 AGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGG 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 525 AGAGGGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGG 584
Query 478 CCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAGAGGAGGCAC 537
| ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 585 CTCTTGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAGGTGTCTGCAGAGGAGGCAG 644
Query 538 AAACATATGCTCAAGAAAACGGTCTTTTCTTCATGGAAACATCAGCAAAAACCGCCACTA 597
| | |||||||||||| ||| | |||||||| |||||||| ||||| || ||||| || |
Sbjct 645 AGATATATGCTCAAGAGAACAGCCTTTTCTTTATGGAAACCTCAGCGAAGACCGCAACAA 704
Query 598 ATGTCAAAGAGATATTCTATGAAATCGC-AAGAAGGCTACCGCGAGTACAGCCAACAGAA 656
|||||||||| |||||||| ||||| || || ||||||||| || ||||||||| | |||
Sbjct 705 ATGTCAAAGACATATTCTACGAAATAGCGAA-AAGGCTACCACGTGTACAGCCAGCTGAA 763
Query 657 AACCCAACAGGAATGGTTCTCCCAGACAGGGCCATGGA-TAGGGCAGTGAGCTCATCTTG 715
||||| |||||||||||||||||| || |||||| || || ||||||||| ||||| ||
Sbjct 764 AACCCGACAGGAATGGTTCTCCCAAAC-GGGCCAGGGGCTACGGCAGTGAGTTCATCGTG 822
Query 716 TTGTGCTTAG-TTA-TATCTCTTAAAAAGAAATCT--TTTGGTCAGTGACTTT-T-GA-A 768
|||||||||| || || | || || | || |||| |||||| ||| || | | || |
Sbjct 823 TTGTGCTTAGATTCGTA-C-CTGAAGA-GAGATCTCATTTGGTTAGTCACATAGTAGAGA 879
Query 769 GT-TATGGACTT-C-TGTGTTTGCGT-TTCTTTG-CTTTGTT 805
| ||||||| | ||||||||| | ||||| | |||||||
Sbjct 880 ACATCTGGACTTTCATGTGTTTGCTTCTTCTTCGTCTTTGTT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5