BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492924
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19370.1 | Symbols: | Protein of unknown function (DUF1218)... 1343 0.0
> AT4G19370.1 | Symbols: | Protein of unknown function (DUF1218)
| chr4:10566150-10567838 REVERSE LENGTH=1070
Length=1070
Score = 1343 bits (727), Expect = 0.0
Identities = 925/1015 (91%), Gaps = 35/1015 (3%)
Strand=Plus/Plus
Query 19 GTATACGCCATCATCTATATTCTTTAAAATGGTTTTGGaaa-aaaaTCATTTGATATAAT 77
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 58 GTATACGCCATCATCTATTTTCTTTAAAATGGTTTTGGAAATTTTATCATTTGATATAAT 117
Query 78 TAAGAATATTTTACTCTCTCTCTTTTTTCCATTCTTAATTTCTTATGTAGTTTGGTAAAA 137
|||| | |||||| ||||||||||| || ||| | | ||||||||| | | |||
Sbjct 118 TAAG-A-ATTTTATTCTCTCTCTTTATT---TTC--CA-TCCTTATGTAG-AT--T-AAA 165
Query 138 G-ACGTTT-CT-AAGCCTTACTTTTTAAAGAAAATT-AAT---T-CGCCTGAGAAATTGA 189
| || ||| || ||||| || || ||||| |||| ||| | | |||||||| ||||
Sbjct 166 GAAC-TTTCCTCAAGCC-TA---TTAAAAGATAATTAAATAAATCCCCCTGAGAATTTGA 220
Query 190 CTCAAATAATCTAAGGTATACTAGCATTTATGTTGTAAAATTACATATATGTAAGTGCGT 249
|||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||
Sbjct 221 CTCAAATAATCTAAGG--T-GTAGCATTTATGTTGCAGAATTACATATATGTAAGTGCGT 277
Query 250 CCCATTGATTTTGACCATTAAAAACTATGCACAACCTTTTTCTCAACTCAGTCGTGTTAT 309
| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 278 CTGATTGATTTTGTCCACTAAAAACTATGCACAACCTTTTTCTCTACTCAGTCGTGTTCT 337
Query 310 CTCTTGGTCTCGTTTCCTTCATCACATGTTTCACAGCCGAGTTCAAGAGAACAAAGAAAG 369
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 338 CTCTTGGTCTCGTTTCCTTCATCACATGTTTCGCAGCCGAGTTCAAGAGAACACAGAAAG 397
Query 370 AAGATATTCGATGGGACACGGAGAGGAACTGCTATGTACCCGAAAGCCATGCGTTTGGGC 429
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 398 AAGATATTCGATGGGACACAGAGAGGAACTGCTATGTACCCGGAAGCCATGCGTTCGGGC 457
Query 430 TTGGATCAGCCGCTGTGT-TTTGCTTCTGCCTTGCTCAGATCGTTGGAAACGTAGTTGTG 488
|||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 458 TTGGATCAGCCGCTGT-TCTTTGCTTCTGCCTTGCTCAGATCGTTGGGAACATAGTTGTG 516
Query 489 TTCCGAAATCACCGGACAAGAACTAAAAGAGAAGATGGTTACAAGATTACTGATCTTACT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TTCCGAAATCACCGGACAAGAACTAAAAGAGAAGATGGTTACAAGATTACTGATCTTACT 576
Query 549 TTACCAACTGTTCTATTGCTCCTTTCCTGGTTCAATTTTGTGGTAGTGGTTTTGATTTTG 608
||||| || |||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 577 TTACCTACGGTTCTATTGCTCCTGTCCTGGTCCAATTTTGTGGTAGTGGTATTGATTTTG 636
Query 609 AGTACTGCAATAAGCATGAGCCGAACTCAAGCTTATGGAGAAGGATGGCTCGATGAAGAT 668
||||| |||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||
Sbjct 637 AGTACCGCAATAAGCATGAGTCGAGCTCAAGCGTATGGAGAAGGATGGCTTGATGAAGAT 696
Query 669 TGTTACCTGGTCAAAGACGGTGTCTTTGCAGCTTCAGGTTGCTTAGCCATCCTTGGACTT 728
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 697 TGTTACTTGGTCAAAGACGGTGTCTTTGCAGCTTCAGGCTGCTTAGCCATCCTTGGACTT 756
Query 729 GGAGCTTTGACCATATCAGCCACCAGGATTAAATTAAAGAAACAACAACAACAACTTGTT 788
|||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 757 GGAGCTTTGACCATTTCAGCCACCAGGATCAAAGTAAAGAAACAACAACAAC---TTGTG 813
Query 789 CAAGTCGTAATCAAAGACCAAAACCAAGAACAGAGAAGATCAATGGAAGAAGAACAAAAC 848
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 814 CAAGTCGTAATCAAAGACCAAAACCAAGACCAAAGGAGATCAATGGAAGAAGAACAAAAG 873
Query 849 CATGATGAGCACCAAACGAACAAGTCAGAAACTGTCATTCACTTGGTGGAAGAAGTGTCT 908
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 874 CATGATGAGCACCAAACGAACAAGTCAGAAAGTGTCATTCACTTGGTGGAAGAAGTGTCT 933
Query 909 TCCACTAATATAAGCAGAATATAAAA-TAAATATAACACGAAAAGTAAAAGAGGAAATAT 967
|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 934 TCCACTAATATAAGCAGAATATAAAAATAAATATAAAACGAAAAGTAAAAGGGGAAATAT 993
Query 968 CGGATATGTTATTATTTACAAAGTTGTATATAATTGGTTAATGCACTTATTGAAT 1022
|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 994 CGGATATGCTATTATTTACAAAGATGTATATAATTGGTTAATGCACTTATTTAAT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5