BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492978
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18810.2 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 2964 0.0
> AT4G18810.2 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:10322156-10325816 REVERSE LENGTH=2072
Length=2072
Score = 2964 bits (1605), Expect = 0.0
Identities = 1734/1798 (96%), Gaps = 2/1798 (0%)
Strand=Plus/Plus
Query 1 TTGAATTGAGGCATGGAGGTTTCATCTTCACTCAAGCTCTCATCATCGTTATCTCCTTCC 60
||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 70 TTGAATTCAGAAATGGAGGTTTCGTCTTCACTCAAGCTCTCATCGTCGTTATCTCCTTCC 129
Query 61 ATTATCAACCTTCAGGGTTCTTCATCAAGTATTGATGTAAAATTCTCTAAGTACACTTCA 120
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 ATCATCAAACTTCAGGGTTCTTCATCAAGTATTGATATAAAATTCTCTAAGTACACTTCA 189
Query 121 CTTCCTAAACCGTTTCTTCAACTTGATGATAAAAGCCGACGTCTTCGTGACCAACAAGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTTCCTAAACCGTTTCTTCAACTTGATGATAAAAGCCGACGTCTTCGTGACCAACAAGTT 249
Query 181 TCACATTCTCTCAATCTAAGGTCATACAGAAAACGGGTCACTGCGAAATCAGGCTCTCAA 240
|||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 250 TCACATTCTCTCGAGCTAAGGTCTTACAGAAAACGGGTCACTGCGAAATCAGGTTCTCAA 309
Query 241 GGTTGGGACTTTGGTAGATTCATCAAAACATTGTACTTTTTCAACGGAGCACCATCTCCG 300
||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct 310 GGTTGGGACTTTGGTAGATTCGTCAAAACATTGTACTTTTTCAATGGACCACCATCTCC- 368
Query 301 T-TAAAGTTTGTTTCATCGGTGTTTGAGAAACTTACTAACGGATCAACGGAGGAACCGGT 359
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 369 TCTAAAGTTTGTTTCATCGGTGTTTGAGAAACTTACTAACGGAGCAACGGAGGAACCGGT 428
Query 360 TACTGAAATGGAAACTACTGGAATCATACTTGTGGCTGGAGCTACTGGTGGTGTAGGAAG 419
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TGCTGAAATGGGAACTTCTGGAATCATACTTGTGGCTGGAGCTACTGGTGGTGTAGGAAG 488
Query 420 AAGGGTTGTTGATATCTTGAGGAAGAGAGGGTTGCCTGTTAAAGCATTGGTTAGAAATGA 479
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 489 AAGGATTGTTGATATCTTGAGGAAAAGAGGGTTGCCTGTTAAAGCATTGGTTAGAAATGA 548
Query 480 AGAGAAGGCTCGGAAGATGTTAGGACCTGACATTGACTTGATTGTTGCAGATATTACGAA 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 549 AGAGAAGGCTCGGAAGATGTTAGGACCTGAGATTGACTTGATTGTTGCAGATATTACAAA 608
Query 540 GGAGAATACATTGGTTCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GGAGAATACATTGGTTCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTC 668
Query 600 TGTTATTGTCGGTCCAAAAGAAGGAGATACACCTGAGAGACAAAAATACAATCAGGGAGT 659
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 669 TGTTATTGTTGGTCCAAAGGAAGGAGATACACCTGAGAGACAAAAATATAATCAGGGAGT 728
Query 660 CAGGTTCTTCGAGCCAGAGATAAAAGGCGACTCTCCCGAGTTAGTGGAATATATTGGAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 729 CAGGTTCTTCGAGCCAGAGATAAAAGGCGACTCTCCCGAGTTAGTGGAATACATTGGAAT 788
Query 720 GAAGAACTTAATCAATGCTGTTAGAGATGGTGTTGGACTTGAGAATGGGAAGCTTCTTTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 789 GAAGAACTTAATCAATGCTGTTAGAGATGGTGTTGGACTTGAGAATGGGAAGCTTATTTT 848
Query 780 CGGTGTTGGGGATAACACGTTTAAAGATCTACCTTGGGGAGCCTTGGATGATGTTGTAAT 839
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 849 TGGTGTCGGGGATAACACGTTTAAGGATCTACCTTGGGGAGCATTGGATGATGTTGTAAT 908
Query 840 GGGAGGTGTCAGCGAAAGTAACTTCCTAGTAGATCTAACCGCTGGTGAAAACGGTGGACC 899
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 909 GGGAGGTGTCAGCGAAAGTAACTTCATAGTAGATCTAACCGCTGGTGAAAACGGTGGACC 968
Query 900 TACCGGAATTTTCAAAGGAATTGTTTCAACAACAAATAATGGCGGATTTACAAGTGTCCG 959
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 969 TACCGGAATTTTTAAAGGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCG 1028
Query 960 AACCAAGAACTTTCCCGAAGCGGAGAATGTCTCTGCATATGATGGCCTAGAGCTAAGACT 1019
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1029 AACCAAGAACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGACT 1088
Query 1020 AAAAGGTGATGGACTCCGTTACAAGCTAATCGTCCGGACAAGCCAGGATTGGGATACTGT 1079
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1089 AAAAGGTGATGGACTCCGTTATAAGCTAATCGTCCGAACAAGCCAAGATTGGGATACTGT 1148
Query 1080 TGGTTACACCGCTAGTTTTGACACTTCACCTGGCCAATGGCAATCTGTACGCTTACCTTT 1139
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1149 TGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTGTACGCTTACCTTT 1208
Query 1140 CTCGTCTTTAAGACCTGTATTTCGTGCACGTACAGTGACAGATGCACCTCCTTTTAATGC 1199
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1209 CTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTTACAGATGCACCACCTTTTAATGC 1268
Query 1200 AAGCAGTATCATTTCACTACAGCTTATGTTTAGCAAATTTGAGTATGACGGTAAGCTTAA 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1269 AAGCAGTATCATTTCACTACAGCTTATGTTTAGCAAATTTGAGTATGATGGTAAGCTTAA 1328
Query 1260 CCCGACTTTCAAAGAAGGACCTTTCGAGCTTCCTTTATCAAGCATTCGAGCTTATATCCA 1319
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1329 CCCTACATTCAAAGAAGGACCTTTCGAGCTTCCTTTATCTAGCATTCGAGCTTATATCCA 1388
Query 1320 AGAACCCGTCACTCCAAGGTTTGTTCATGTTGGCTCTGCGGGAGTAACCCGACCAGAGAG 1379
||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1389 AGACCCCGTCACTCCAAGGTTTGTTCACGTTGGCTCTGCGGGAGTTACTCGACCAGAGAG 1448
Query 1380 ACCCGGTTTGGATCTAAGCAAACAACCTCCGGCTGTGAGATTAAACAAAGAGCTTGATTT 1439
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1449 ACCCGGTTTGGATCTAAGCAAACAACCTCCGGCCGTGAGATTAAACAAAGAGCTTGATTT 1508
Query 1440 CATTCTCACTTACAAGTTAAAGGGAGAGGATCTGATACGCGAAAGCGGGATTCCATTTGC 1499
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1509 CATTCTCACTTACAAGTTAAAGGGAGAGGATCTGATACGCGACAGCGGGATTCCATTTGC 1568
Query 1500 GATTGTACGGCCATGTGCTTTAACAGAAGAGCCTGCCGGAGCTGATCTCATTTTCGAACA 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 AATTGTACGGCCATGTGCTTTAACAGAAGAGCCTGCCGGAGCTGATCTCATTTTCGAACA 1628
Query 1560 AGGAGACAATATTACGGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGC 1619
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGAGACAACATTACGGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGC 1688
Query 1620 TTTAGAAAGCCCGTATGCTCTAAACAAGACATTCGAGGTTAAAAGTACGGTTCCGTTTAG 1679
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1689 TTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGGTTAAAAGTACGGTTCCGTTTAG 1748
Query 1680 TGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGAAAGACTACAATGAGTATTT 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 CGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGAAAGACTACAATGAGTATTT 1808
Query 1740 CAAGAATCTGAAAGATGGAATCACCGGTAAAGAAGCTTTAGAACAGAGCACTGTTGCA 1797
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CAAGACTCTGAAAGATGGAATCACCGGTAAAGAAGCTTTAGAACAGAGCACTGTTGCA 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97941263295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5