BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492985
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18740.1 | Symbols: | Rho termination factor | chr4:1030345... 942 0.0
> AT4G18740.1 | Symbols: | Rho termination factor | chr4:10303457-10304572
REVERSE LENGTH=917
Length=917
Score = 942 bits (510), Expect = 0.0
Identities = 696/781 (89%), Gaps = 32/781 (4%)
Strand=Plus/Plus
Query 1 GTGAGGAAAGAGGCCAAAGTGAGAATTGTTGGAAGACTATCTCTGATTTTCAGGGAAAGG 60
|||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 20 GTGAAGAAAGAGGCCAAAGTGAGAACTGTCGGAAGACAATCTCTGATTTTCAGGGAAAGT 79
Query 61 CAGGACTTTTGGCTATGGACTTGGCTCTTCATTGTCCTTGTGCTTACCCGTTGATCAGAC 120
||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 80 CAGGAATTAAAGCTATGGACTTGGCTCTTCATTGTCATTGTGCTTACCCGTTGATCAAAC 139
Query 121 AAGGATTCA-GAAGAACTAAATCAGCTAATCATCTTCTTGTTCGAGATACACCTTCACTG 179
|||||||| | ||| |||||||||| |||||||||| |||||||||||| | |||||||
Sbjct 140 TAGGATTCATG-AGAGCTAAATCAGCCAATCATCTTCATGTTCGAGATACTCATTCACTG 198
Query 180 CTGTTTGCGTTGCGGTTTGAGCAGAGTCTTTCAAGAACAACAATTAATGGCGATAGAAGA 239
| |||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 199 CCGTTTGCGTTGCGCTTTGAGCAGAGTCTTTCGAGAACAACGATTAATGGAGATAGAAGT 258
Query 240 ATTTGGTTTCAAGAGAAAGGTGGTTCTTCTTTTACTTCAATGGGGAGATCCAACAAGGGA 299
||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||
Sbjct 259 ATTTGGTTTCAAGAGAAAGGTGGTTCTTCTTATACTTCAATGGGAAGATCCAAGAAAGGA 318
Query 300 TATGTTTGTTGC----AA------G--A-A--AACGTCAAACCCGAGTAAATCAAACCAA 344
| |||||||||| || | | | |||||||||||| |||||||| ||||||
Sbjct 319 TGTGTTTGTTGCAAGAAACCGTCTGATAGACGAACGTCAAACCCAAGTAAATCGAACCAA 378
Query 345 GAGGAGATCATTTCTCTCTTGAGACGGATTCAATCTTCGATCTCTAAAGGAGAGTCTCGG 404
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 379 GAGGAGATCATTTCGCTCTTGAAACGGATTCAATCTTCGATCTCTAAAGGAGAGTCTC-G 437
Query 405 GGGA-TTGAGGAAAAGAAGAACAGCGATGAGTCTTCTAAGGAAAAGCCGCTGACCAAAGC 463
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGGAGTCGAGGAAGAGAAGAACAGCGATGAGTCTTCTAAGGAAAAGCCGCTGACCAAAGC 497
Query 464 TATTTTTGACGTTCTTGAGAAATCAAGaaaaaaaaCTGAGGGAGATACTAGTGTGAAGAA 523
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 498 TATTCTTGACGTTCTTGAGAAATCAAGAAAAAAAACTGAGGGAGATACTAGTGTGAAGGA 557
Query 524 GAAGCCACCAAAGGGACCAGTAGAGGTTTCTCAACCACCGTCTAATTTCG-CAA-AGGAA 581
||||||||||||| ||| ||||||| || ||| ||||||||||| ||| | ||| || ||
Sbjct 558 GAAGCCACCAAAGAGACAAGTAGAGCTTCCTCGACCACCGTCTAGTTTTGTCAAGAG-AA 616
Query 582 ACTCCTATA-C--CTTCTGCCTCAGGTCCAAGTGGTAAGCTTCCAGTATCAAACAGCAAT 638
||||| || | ||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 617 -CTCCTTTATCTTCTTCTGCCTCAGGTCCAAGAGGTAAGCTCCCAGTATCAAACAGCGAT 675
Query 639 AAAGCTTTAGGGGAAAT-GA-AC-GTTAAGGAAGAGAAAGCTTCATTGATAGAAACTATG 695
||||||||||| |||| || | | |||||||||||||||||| ||||||||||||||
Sbjct 676 AAAGCTTTAGGA-AAATTGACAAAG--AAGGAAGAGAAAGCTTCACTGATAGAAACTATG 732
Query 696 AAACTTGCAGAGCTCAAAGAAGTTGCAAAGAATAGAGGAATAAAAGGATACTCAAAGTTG 755
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 733 AAACTTGCAGAGCTCAAAGAAGTTGCAAAGAACAGAGGAATCAAAGGATACTCAAAGTTG 792
Query 756 A 756
|
Sbjct 793 A 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5