BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492995
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18630.1 | Symbols: | Protein of unknown function (DUF688) ... 2362 0.0
> AT4G18630.1 | Symbols: | Protein of unknown function (DUF688)
| chr4:10257078-10258943 FORWARD LENGTH=1749
Length=1749
Score = 2362 bits (1279), Expect = 0.0
Identities = 1543/1666 (93%), Gaps = 35/1666 (2%)
Strand=Plus/Plus
Query 33 ACACAAAACAGAGACTCTGTTTCTTA---TT-CTT-TTTCT-TTTTAAAGAATGGAGGGA 86
|||||||||| ||||||||||| ||| || ||| ||| | |||| |||||||||||||
Sbjct 50 ACACAAAACAAAGACTCTGTTTGTTATTCTTCCTTCTTTTTGTTTTCAAGAATGGAGGGA 109
Query 87 AGGAAATTGAATTTGTATGCTCCATTACCATCAATAAGACGGATTCCGTCTATGATAGAG 146
| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 110 AAGAAATTGAATTTGTATGCTCCATTACCATCAATCAGGCGAATTCCGTCTATGATAGAG 169
Query 147 CGTTCCGGTGAGTTAGAGAACAAGAAGACGACGATTACAAGACCAGAGCTTCGATCATGT 206
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 170 CGTTCAAGTGAGTTAGAGAATAAGAAGACGACGATTACAAGACCAGAGCTTCGATCATGT 229
Query 207 CCAAGCACAAAACAAGAAACGCCGGTTTTTGTATTACCAGACCAGAGCTTTGATCATCTC 266
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CCGAGCACAAAACAAGAAACGCCGGTTTTTGTATTACCAGACCAGAGCTTTGATCATCTC 289
Query 267 ACAGAACCAGCTTCAATTCCTTTTATGTGGGAACAAATCCCAGGAAAACCAAAAGATGAC 326
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 290 ACAGAACCAGCTTCAATTCCTTTTATGTGGGAACAAATCCCTGGAAAACCAAAAGATGAC 349
Query 327 ATGGCTACATTGATTCAAGAATCAGGTTTACTAGAAACCGATGATgaagaagaagaagac 386
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 350 ATGGCTACATTGATTCAAGAGTCAGGTCTACTAGAAACCGATGATGAAGAAGAAGACGAA 409
Query 387 g-a-a-gaagaTTTGGATACGGTTTCTTCAAATGTAAGCTTCTCTGTTAACTGCAGCACG 443
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GTAGATGAAGATTTGGATACGGTTTCTTCAAATGTAAGCTTCTCTGTTAACTGCAGCACA 469
Query 444 AGTGGAGTTAGCGAAATCGAGAAGACCGGTGAGAAATCTGATTCTGATGATG-TGTCTAG 502
|||||||||||||||||||||||||||||||||| |||||||| |||||| | ||||||
Sbjct 470 AGTGGAGTTAGCGAAATCGAGAAGACCGGTGAGAGATCTGATTGTGATGA-GAAGTCTAG 528
Query 503 AGAAAGTCTTGATCTAATGATGTCGAGATTCTTACCAGCTGCTAAAGCAATGGCTCTTCA 562
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 529 AGAAAGTCTTGATCTAATGATGTCAAGATTCTTACCAGCTGCTAAAGCAATGGCTCTTCA 588
Query 563 GACACATCAGAAACATCAATCTTCTTATAACTCTTCAGAGCAGAAGCTAATCACTCAAAA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 589 GACACATCAGAAACATCAATCTTCTTATAACTCTTCAGAGCAGAAGCTAATCACTCAGAA 648
Query 623 CAGAGAAGCTCTCCTAATTCGCCAAAGAAGTCAGTTAGTCGCAGAACATGAACATTTCGC 682
||||||||||||| || ||| ||||||||||| | || ||||||||||||||||||||
Sbjct 649 CAGAGAAGCTCTCGTAGCTCGTCAAAGAAGTCAACTGGTTGCAGAACATGAACATTTCGC 708
Query 683 CATTGTTCAGAGTCTTTatgatgatttaaacattgatgatgatactgacgacgacgatg- 741
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 709 CATTGTTCAGAGTCTTTACGATGACTTAAACATTGATGATGATACTGAAGACGACGA-GA 767
Query 742 atgatgattatgatga-caatagcggtgatggtgatCACAAGATCTATCCA---GAAGTT 797
|||||||| ||| ||| | || ||| ||| ||||||||||||||| ||| ||||||
Sbjct 768 ATGATGATGATGGTGATGATTA-TGGTCATGTTGATCACAAGATCTACCCAGCTGAAGTT 826
Query 798 ACCAAGAAAGTTTGTGGATTCTTGCCAAGGCTTTGTGCTAAGAACTCATTCAAGTTTCTA 857
|||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 827 ACCAAGAAAGCTTGCGGATTCTTGCCAAGGCTTTGTGCGAAGAACTCATTCAAGTTTCTA 886
Query 858 AACCCGGTTCCTTTGGATTCAGTATCAAACCGGTCTAAGAAACATTCGGGTGATCAAACC 917
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 887 AACCCGGTTCCTTTGGATTCAGTATCAAACCGGTCTATGAAACATTCGGGTGATCAAACC 946
Query 918 GGTTTACCAAACTGGTCAACTAGGCGTCTTTCCGGTTTTATCTCTCCGTACCGAACTTCT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 947 AGTTTACCAAACTGGTCAACTAGGCGTCTTTCCGGTTTTATCTCTCCGTACCGAACCTCT 1006
Query 978 TGTTCGGATTCCGGTTTTATCGCAACTCCGGAGAAACCAGAGAGCTTCAAAAGGCTAAAC 1037
|||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1007 TGTTCGGATTCCGGTTTTCTCGGAACTCCCGAGAAACCAGAGAGCTTCAAAAGGCTAAAC 1066
Query 1038 AGAGGAATAAGCAAGTCTCAAGAACTGTATCCAACCAGAACAAGAAGAGAGGTTCTTCCT 1097
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1067 AGAGGAATAAGCAAGTCTCAAGAACTGTATCCAACAAGAACAAGAAGAGAGGTTCTTCCT 1126
Query 1098 AATTATTCGAATTCTGGAGAAATCAGAATGTTTAGAAACTCGGTCTCCACTCCTACGAGG 1157
||||| || ||||||||||| |||| |||||||||||||||| |||| |||||| |||||
Sbjct 1127 AATTACTCAAATTCTGGAGAGATCAAAATGTTTAGAAACTCGATCTCTACTCCTTCGAGG 1186
Query 1158 ATCCAACGTACGACAATTCACGATTCGAGGTTTCTTGTGGAGGAAGTAAACAGAAGAAGG 1217
|||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1187 ATCCAACGGACCACAATTCACGATTCTAGGTTTCTTGTTGAGGAAGTAAACAGAAGAAGG 1246
Query 1218 AACGATAGGTCAGGGCATCTTCTCA-AAACATCGTCGGAATATACACCCGCACTTTCTCC 1276
||| | | ||||||| |||||| | |||||||||||||||||||||| || ||||||||
Sbjct 1247 AACAACAAGTCAGGGAATCTTC-AACAAACATCGTCGGAATATACACCTGCGCTTTCTCC 1305
Query 1277 TCCGCCGTTGCCAGAAACTCCGTCTCGATCCTGGCTTGGAAGAACCCTCCTACCGCCGTT 1336
||| ||||| || |||||||||||||| |||||||| ||| ||||||||||||||||| |
Sbjct 1306 TCCTCCGTTACCGGAAACTCCGTCTCGTTCCTGGCTCGGACGAACCCTCCTACCGCCGGT 1365
Query 1337 AAACCCGAGACAACACGGTGTCGTTTTAGGTCAAGTTGGTAACAAGAAACTGAATCAAGA 1396
|||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1366 GAACCCGAGACCGTACGGCGTCGTTTTAGGTCAAGTTGGTATCAAGAAACTGAATCAAGA 1425
Query 1397 AGTTCTTGAATCTACGAAATGGGAAACGATCGTTAAAACATCGTATGTTCACAACGATCA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AGTTCTTGAATCTACGAAATGGGAAACGATCGTTAAAACATCGTATGTTCACAACGATCA 1485
Query 1457 CGCTCGTTATTCTCAGGAGCTGATTGTTTATCCATCTCGCCAGCAAAATACATAAAACCA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 CGCTCGTTATTCTCAGGAGCTGATTGTTTATCCATCTCGCCAGCAAAATACATAAAACCA 1545
Query 1517 GACAAATTACATCATCtt-tttttACAGTACTATCGAA-TTAATAAATAGTTTTAAGGTT 1574
|||||||||| | |||| |||||||| ||| || || |||||||||||||||||||||
Sbjct 1546 GACAAATTAC-T--TCTTGTTTTTACATTACAATT-AAGTTAATAAATAGTTTTAAGGTT 1601
Query 1575 TGCCTCTTATTTTTCTTGTAGGCAACAACATAAATGTACCCGAGATTGATTCTTTGTGTT 1634
||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||
Sbjct 1602 TGCCTCTTATTTTTCTTGTAGGCAACA-CA-AA-TGTACCCGAGATTGATTCTTTATGTT 1658
Query 1635 TCAATTTTTTGTGTGTGTAGCTCAATATAATTGTGGCGTTTGTTTT 1680
||||| |||| ||||||| | | |||||||||||||||||||||
Sbjct 1659 TCAATATTTT-TGTGTGT-G-T---TATAATTGTGGCGTTTGTTTT 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5