BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493006
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18530.1 | Symbols: | Protein of unknown function (DUF707) ... 1059 0.0
> AT4G18530.1 | Symbols: | Protein of unknown function (DUF707)
| chr4:10217338-10220500 FORWARD LENGTH=1796
Length=1796
Score = 1059 bits (573), Expect = 0.0
Identities = 675/723 (93%), Gaps = 12/723 (2%)
Strand=Plus/Plus
Query 806 GATACCTATCTATTGTCAAAGAAGAGGGGCTTCAGATATCACAACCCGCTCTCGACACTT 865
|||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||
Sbjct 1019 GATATCTATCTATTGTCAAAGAAGAGGGGCTTGAGATATCGCAACCTGCTCTTGACACTT 1078
Query 866 CAAAATCAGAAGTGCATCATCCTATAACCGCTCGTCGaaaaaaaTCAAAATTTCATAGAA 925
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1079 CAAAATCAGAAGTGCATCATCCTATAACCGCTCGTCGAAAAAAATCAAAAGTTCATAGAA 1138
Query 926 GGATGTATAAATACAAAGGTAGCGGGCGATGTGATGACCATAGCACCAATCCTCCCTGCA 985
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 GAATGTATAAATACAAAGGTAGCGGGCGATGTGATGACCATAGCACCAATCCTCCTTGCA 1198
Query 986 TCGGGTGGGTAGAAATGATGGCACCTGTTTTCTCTAGAGCAGCATGGAGATGTTCTTGGT 1045
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 TCGGGTGGGTGGAAATGATGGCACCTGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGT 1258
Query 1046 ATATGATTCAGAATGATTTGATCCATGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATATGATTCAGAATGATTTGATCCATGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTG 1318
Query 1106 CTCAAGGTGATCGAAAGAAAAATGTTGGTGTTGTTGATGCGGAGTACATTATTCATTACG 1165
|||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1319 CTCAAGGTGACCGAAAGAAAAATGTCGGTGTTGTTGATGCGGAGTACATAATTCATTATG 1378
Query 1166 GTCTTCCTACGCTAGGTGTGGTTGAAACAGCTTCAAGCTCTTTGCGGAACGAGACAGACC 1225
||||||| ||||| |||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 1379 GTCTTCCAACGCTCGGTGTGGTTGAAACCGCTTCAAGCGCTTTGCGGAATGAGACAGACT 1438
Query 1226 CGAAATCAACGGAATCATCAGAGTCTCGTGAAGTGGACAATAGACCAGAAGTTAGGATGA 1285
|||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 1439 CGAAATCAACGGAATCATTAGAGTCTCGTGAAGTGGATAATAGACCAGAAGTGAGGATGA 1498
Query 1286 AATCATTTGTAGAGATGAAGAGATTCAAGGAACGTTGGAAGAAAGCTGTGAGAGATGATA 1345
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1499 AATCATTTGTGGAGATGAAGAGATTCAAGGAACGTTGGAAGAAAGCTGTGAGGGATGATA 1558
Query 1346 GATGTTGGGTCGATCCGTATTAAAA-CCTGAGGGGTTTAAGTAAACCGAACCAAACCGGA 1404
||||||||| |||||||||| ||| || ||| ||||||||||||||||| |||||||||
Sbjct 1559 CATGTTGGGTTGATCCGTATTGAAATCC-GAGCGGTTTAAGTAAACCGAATCAAACCGGA 1617
Query 1405 TTATTTTCCTTGTTGAGTGGTGAGTGCTTTGTGGTCGGTCCATTGTATACCATTATTT-G 1463
|| |||||||||||||||| || |||||||||| | ||||||||||||||||| |
Sbjct 1618 TTCTTTTCCTTGTTGAGTG-TG----CTTTGTGGTC---C-ATTGTATACCATTATTTTG 1668
Query 1464 GTACATAAATTTTGTTTTACTTGGaaaaaaaTCAGTGTATTTATGTGTTTAATGGACCAC 1523
||||||| |||||||||||||| || |||||| ||||||||||||||||| |||||||||
Sbjct 1669 GTACATAGATTTTGTTTTACTTCGAGAAAAATTAGTGTATTTATGTGTTTTATGGACCAC 1728
Query 1524 AGT 1526
|||
Sbjct 1729 AGT 1731
Score = 652 bits (353), Expect = 0.0
Identities = 513/584 (88%), Gaps = 36/584 (6%)
Strand=Plus/Plus
Query 39 AAAACCCTTGAA-ATTGCTACACGATCTCAGAAACGTGTCTC--T--CTGACTTCAATCT 93
|||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 51 AAAACCCTTGAATTTTGCTACACGATCTCTGAAACGTGTCTCTTTGACTGACTTCAATCT 110
Query 94 TCTTCATCAATTCCCGTTTCTGGATTTTATGAAGCCACTGAGC---T-AAAAGCTTC-TC 148
|||| |||| || |||||||||| ||||||||||| ||||||| | ||||||||| ||
Sbjct 111 TCTTTATCACTTACCGTTTCTGGGTTTTATGAAGCAACTGAGCTAATAAAAAGCTTCTTC 170
Query 149 TTTGTTTAACGAAACTCACACAAGGAAAACAGAATCTTTATTTTTTAAAGCTTCGAAATT 208
|| | | || || | | || ||||||||||||||||| ||||||||||| |||||
Sbjct 171 TTAGACT--CGGAA-GAAGATAA--AAAACAGAATCTTTATTGTTTAAAGCTTCCAAATT 225
Query 209 TGAGAAGAGAATTTAAAACGACCAAGTTCGGGATATATTCGTttcttcatcttcttctac 268
||||||||||||| |||||||||||||| || ||||||| || ||||| |||||
Sbjct 226 CGAGAAGAGAATTTGAAACGACCAAGTTCAGG--ATATTCG----TT--TCTTCGTCTAC 277
Query 269 tttggtctcttcctcttctctctcGAAAAGGGTTTATTCTCTGTCACAAAAGAAACCTTT 328
||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 278 TTTGGTCTCTTCCTCTTCTCTTTCGAAAAGGGTTTA-T-TCTGTCTTAAAAGAAACCTTT 335
Query 329 TTGAGGGAAGG-aaaaaaaGCTTCAATTTTCAGAGAAACCCAAAAGGCAGAAACAGAGAT 387
|||| || || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 TTGA--GAGGGTAAAAAAAGCTTCAATTTTCAGAGAAACACAAAAGGCAGAAACAGAG-- 391
Query 388 ATCAAAATCAAAATCACCTAATAT-ATGAAACAGGGTTCAATGAATAGATCGTGTCTCTG 446
| |||| | |||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 392 A--AAAA-C-AAATCATCTAAT-TCATGAAACAGGGTTCAATGAATAGATCGTGTCTCTG 446
Query 447 CAGTGTCTTAATCACCACTGCTCTGATTTGTGGTGCTTACTTCATTGGCAATGCTTATCT 506
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 447 TAGTGTCTTAATCACCACTGCTCTGATTTGTGGTGCTTACTTCATTTGCAATGCTTATCT 506
Query 507 TGCTAAAGACTTTAAAGAGAAATTGCTAAAGTGGGAAATCACTGATAAGATGCATAACAT 566
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 507 TGCTAAAGACTTTAAAGAGAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAG 566
Query 567 TACTGATAAGTTGCAGAATGCAACATCAACCAGTACATGCCAGA 610
|||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 567 TACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAGA 610
Score = 137 bits (74), Expect = 3e-31
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 608 AGAGAAGGCCGAACCATTCGATGAGTTTGTTAGCCATGGCGGTTGGAATCAAGCAGAAGG 667
|||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 713 AGAGAAGGCCTAACCATTCGATGAGTTTGTTAGCCATGGCGGTCGGTATCAAGCAAAAGG 772
Query 668 AGCTAGTTAACAAAGTTATCCAAAAGATTT 697
|||||||||||||||||||||||||| |||
Sbjct 773 AGCTAGTTAACAAAGTTATCCAAAAG-TTT 801
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 763 GAGTATGAGTATATATTTCTTTGGGACGAAGATCTTGGTGT 803
||||| |||||||||||||||||||||||||||||||||||
Sbjct 958 GAGTACGAGTATATATTTCTTTGGGACGAAGATCTTGGTGT 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5