BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493022 Length=1692 Score E Sequences producing significant alignments: (Bits) Value AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea an... 2483 0.0 > AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10162953-10165562 REVERSE LENGTH=1845 Length=1845 Score = 2483 bits (1344), Expect = 0.0 Identities = 1593/1707 (93%), Gaps = 41/1707 (2%) Strand=Plus/Plus Query 1 ACAGTGCTTTTGATGA--CTCTGCAAC-AACAGCAGCTGCTTCAGACAAAGCTTAAACGA 57 |||||||||||||||| ||||||||| |||| |||| ||| ||||||||||||| |||| Sbjct 147 ACAGTGCTTTTGATGACTCTCTGCAACAAACAACAGCAGCTGCAGACAAAGCTTATACGA 206 Query 58 AGCTGTATCTACTGACTTTGATGGTGAAATATCAAAAACCCTAAATTTA-TTaaaaaaaa 116 ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| Sbjct 207 AGCTGTATCTACTGACTTTGATGGTGAAATATCAAAAACCCTAAATTAATTTTAAAAAAA 266 Query 117 aaCACAAtttttttt-tttttttggtttttCCTCTGAGGGTTTTCATCATCAATGCTTAC 175 ||||| ||||||||| || |||||||||||||||||||||| |||||||||||||||||| Sbjct 267 AACAC-ATTTTTTTTCTTCTTTTGGTTTTTCCTCTGAGGGTATTCATCATCAATGCTTAC 325 Query 176 AAAGTACAGTGGGTaaacaaaacaaaaatataaaaaCCAAtttttttC-CACTTCTTTAA 234 ||||||||||||||||||||||| |||| | ||||||| ||||||||| | ||||||||| Sbjct 326 AAAGTACAGTGGGTAAACAAAAC-AAAA-ACAAAAACCCATTTTTTTCTC-CTTCTTTAA 382 Query 235 ATCCCAAACCAACCCTAAAGTTTCGATTTTTAAATTTGGGGGAAACCAACAGaaaaa-aa 293 ||||||||||||||||||||||| ||||||||| |||||||| |||||| | ||||| || Sbjct 383 ATCCCAAACCAACCCTAAAGTTTTGATTTTTAATTTTGGGGGTAACCAA-AAAAAAACAA 441 Query 294 aaCCCTAA-tttttttCTTTGGTCATGAGATTATTGGTGATGATGAAATGATTGGAGATC 352 |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 442 AACCCTAATTTTTTTTCTTTAGTGATGAGATTATTGGTGATGATGAAATGATTGGAGATC 501 Query 353 TAATGAAGAAT---AACAATGGCGACGTTGTGGATAGCGGAA-ACAACAACCGGTTAAGC 408 ||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| Sbjct 502 TAATGAAGAATAACAACAATGGCGACGTTGTGGATAAC-GAAGTGAACAACCGGTTAAGC 560 Query 409 CGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCTCGAGCTTCCGGTGGTAAAGAT 468 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 561 CGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCACGAGCTTCCGGTGGTAAAGAT 620 Query 469 CGACACAGCAAAGTCTTGACTTCGAAAGGTCCACGTGACCGGCGTGTCCGGTTATCAGTC 528 ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 621 CGACACAGCAAAGTCTTGACTTCTAAAGGACCACGTGACCGTCGTGTCCGGTTATCAGTC 680 Query 529 TCCACTGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTACGATCAACCGAGCAAA 588 ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 681 TCCACCGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTATGATCAACCTAGCAAA 740 Query 589 GCTGTGGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAAC 648 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 GCTGTTGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAAC 800 Query 649 AACACTAATTTTCCGACCGATGACGAGAATCATCAGAACCAGACATTAGCAAGAACAGTT 708 |||||| ||||||||||||||||||||||||| ||||| |||||||| || ||||||| Sbjct 801 AACACTCATTTTCCGACCGATGACGAGAATCACCAGAATCAGACATT---AACAACAGTT 857 Query 709 GCTGCTGCGAATTCGTTGTCTAAATCGGCTTGTAGTAGTAATTCAGACACGAGCAAGAAC 768 |||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 858 GCTGCT---AATTCCTTGTCTAAATCTGCTTGTAGTAGCAATTCAGACACGAGCAAGAAC 914 Query 769 TCTTCTGGTTTGTCTTTATCAAGATCGgagctaagagataaagctagagagagagctaga 828 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 915 TCTTCTGGTTTGTCTTTATCAAGATCGGAGCTTAGAGATAAAGCTAGAGAGAGGGCTAGA 974 Query 829 gagagaacagctaaagagaccaaggagagagaTCATAACCACACTTCTTCGTTTACCGAT 888 |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| Sbjct 975 GAGAGAACAGCTAAAGAGACCAAGGAAAGAGATCATAACCACA---CTTCGTTTACGGAT 1031 Query 889 TTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCT 948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 TTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCT 1091 Query 949 TCTTCATCTCCAATGGAGTATTTTAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACC 1008 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1092 TCTTCATCTCCAATGGAGTATTTCAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACC 1151 Query 1009 CATTTCCCGATTTCAACAAATTCtcatcctttctcatcaatctccgatcaccatcatcat 1068 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1152 CATTTCCCTATTTCAACAAATTCTCATCCTTTCTCATCAATCTCCGATCATCATCATCAT 1211 Query 1069 catcatcatc--CA-CACCAAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCA 1125 |||| ||||| || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1212 CATCCTCATCATCAGCATCAAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCA 1271 Query 1126 GGATCCAACGGCGGAGCATTCAATCTTGATTTCAACATGTCGACACCCTCCGGCGCCGGA 1185 | |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct 1272 GAATCCAACGGCGGAGCATTCAATCTTGATTTTAATATGTCAACACCCTCCGGCGCCGGA 1331 Query 1186 GCTGCCGTCTCCGCCGCATCAGGTGGTGGGTTCAGTGGTTTCAACAGGGGGACCCTTCAG 1245 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1332 GCTGCCGTCTCCGCCGCATCAGGTGGTGGCTTCAGTGGTTTCAACAGGGGGACCCTTCAG 1391 Query 1246 TCCAATTCAACAAATCATCATCAGCATCAGTCATTTCTCGCTAATCTACAGAGGTTTCCA 1305 ||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| Sbjct 1392 TCCAATTCAAC--A--A--ATCAGCATCAGTCATTCCTCGCTAATCTACAGAGGTTTCCA 1445 Query 1306 TCATCAGAAAATGGTGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCAC 1365 ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1446 ACATCAGAAAGTGGAGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCAC 1505 Query 1366 CACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGACCAT 1425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1506 CACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGAACAT 1565 Query 1426 AAAGGTAAAGGCAAGAACTGATGATATTAATTATTGCATCTTTGGTTTAATTCAGATCCT 1485 || ||||||||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 1566 AAGGGTAAAGGCAAGAACTGATGATATTAATTATTGCATCTTTGGTTTTGTTCAAATGCT 1625 Query 1486 CATTTTGTATGTTTAATTTTTGGTTTATTTCAAAACAAATGTTAATCTCTTTTGTTGTCT 1545 ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1626 CATTTTGTATGTTTA-TCTTTGGTTTATTTCAAAACAAATGTTAATCTCTTTCGTTGTCT 1684 Query 1546 GATCTGTGTTAGGGttttttttttGTAATGTTTTGAGGGTCTTTTGAAATCTGTTAGCAT 1605 ||| |||||||||||||| |||| | ||| |||||||||||| ||||||| || |||| Sbjct 1685 GATGTGTGTTAGGGTTTTGTTTT---A-TGTATTGAGGGTCTTTGGAAATCTTTTTGCAT 1740 Query 1606 TGTATTTGTAATGTTGTATTTGTGATAATACCATTTTGTTTGTGAGTTTATAATTCAATT 1665 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1741 TGTGCTTGTAATGTTGTATTTGTGATAATAGCATTTTGTTTGTGAGTTTATAATTGAATT 1800 Query 1666 TTTGAGTGTTATTTTTGGCATGAAATT 1692 ||||| ||||||||||| |||| |||| Sbjct 1801 TTTGAATGTTATTTTTGCCATGTAATT 1827 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83634107970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5