BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493027
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18370.1 | Symbols: DEG5, DEGP5, HHOA | DEGP protease 5 | ch... 1546 0.0
> AT4G18370.1 | Symbols: DEG5, DEGP5, HHOA | DEGP protease 5 |
chr4:10149129-10151218 FORWARD LENGTH=1245
Length=1245
Score = 1546 bits (837), Expect = 0.0
Identities = 1102/1223 (90%), Gaps = 46/1223 (4%)
Strand=Plus/Plus
Query 1 CCTTATCACCTCTGAGTGG---AAGTTGAGTGAGAGCCATTGTAGGAAGAGCTTC----- 52
||||||||||||||||||| || ||||||||| ||||||||||| ||||||||
Sbjct 26 CCTTATCACCTCTGAGTGGAAAAAATTGAGTGAGCGCCATTGTAGG-AGAGCTTCGGGAA 84
Query 53 -G-AG-A-AAGAAGAAGAAGCCATGACTATGGCTCTTGCTTCTTCTAAAGCTTTTTCCTC 108
| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 85 AGAAGAAGAAGAAGAAGAAGCCATGACCATGGCTCTTGCTTCTTCTAAAGCTTTTTCCTC 144
Query 109 AATCTTTTATGCTTTAACTCCATTCAATCCA-TCG-AATTATGTGTTAGCTTGCTCTGGT 166
|||||| || ||||| | ||| ||||| || ||| |||| |||||||||||||||||||
Sbjct 145 AATCTTCAATACTTTATCACCAATCAAT-CAGTCGAAATT-TGTGTTAGCTTGCTCTGGT 202
Query 167 TCAAATCATGTAAACGTCGTTGATCGGAGAAGAAGAATCGTGATCTTCGGTTCGAGTTTG 226
|||||||||||| ||||| |||||||||||||||||||| ||||||| || |||||||||
Sbjct 203 TCAAATCATGTAGACGTCATTGATCGGAGAAGAAGAATCATGATCTTTGGCTCGAGTTTG 262
Query 227 GCGCTCGCGTCGTCTCTGATTGGTTCCAATCAACAGAGATTTCCGATGGAATCTGCGATC 286
|| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| || |||
Sbjct 263 GCTCTCACGTCGTCTCTGCTTGGTTCCAATCAACAGAGACTTCCGATGGAATCCGCAATC 322
Query 287 GCATTGGAGCAATTgaaagaaaaagaagatgagcttgaggaagaagaagagagaaaTGTC 346
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 323 GCATTGGAGCAATTCAAAGAAAAAGAAGAAGAGCTTGAGGAAGAAGAAGAGAGAAATGTC 382
Query 347 AATCTCTTCCAGAAAACTTCTCCGTCTGTTGTCTACATAGAAGCCATTGAGCTGCCCAAA 406
|||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 383 AATCTCTTCCAGAAAACTTCGCCGTCTGTTGTTTACATTGAAGCTATTGAGCTTCCCAAA 442
Query 407 ACGTCTTCTGGTGA-ATT-T-AGTGATGAGGAAAATGCAAAGATCGAAGGGACAGGTTCA 463
|||||||||||||| || | | |||||||||||||| ||||||||||||||||||||||
Sbjct 443 ACGTCTTCTGGTGATATACTCACTGATGAGGAAAATGGAAAGATCGAAGGGACAGGTTCA 502
Query 464 GGATTCGTGTGGGATAAGCTTGGTCACATTGTAACAAATTATCATGTCATTGCCAAGTTA 523
|| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 503 GGCTTCGTTTGGGATAAGCTTGGTCACATTGTTACAAATTATCATGTTATTGCTAAGTTA 562
Query 524 GCTACAGATCAATTTGGATTACAACGTTGTAAGGTTTCTCTAGTTGATGCTACGGGAACA 583
||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 563 GCTACTGATCAGTTTGGATTACAACGTTGTAAGGTGTCTCTAGTTGATGCTAAGGGAACA 622
Query 584 AGATTTAGCAAGGAAGGGAAAATTGTTGGTCTTGATCCAGATAATGATCTAGCTGTGTTG 643
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 623 AGATTTAGCAAGGAAGGGAAAATTGTGGGTCTTGATCCAGATAATGATCTAGCTGTGTTG 682
Query 644 AAGATTGAAACCGAGGGTCACGAATTAAAACCTGTTGTTCTCGGTACCTCTAATGATCTA 703
||||||||||| ||||| | ||| |||| |||||||||||||||||||| |||||||||
Sbjct 683 AAGATTGAAACTGAGGGACGTGAACTAAATCCTGTTGTTCTCGGTACCTCCAATGATCTA 742
Query 704 CGCGTAGGTCAAAGTTGCTTTGCGATCGGGAATCCGTATGGATATGAAAACACCTTGACA 763
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 743 CGCGTAGGTCAAAGTTGCTTTGCGATTGGGAATCCATATGGATATGAAAACACCTTGACA 802
Query 764 ATTGGGGTAGTGAGTGGATTGGGAAGAGAGATACCTTCACCTAATGGTAAGAGTATT-CG 822
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 803 ATAGGGGTAGTAAGTGGGTTGGGAAGAGAGATACCTTCACCTAATGGGAAGAGTATTTC- 861
Query 823 AGAAGCTATACAAACCGATGCTGATATTAACTCAGGCAATTCAGGAGGGCCGTTGCTTGA 882
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 862 AGAAGCTATACAAACCGATGCTGATATTAACTCAGGCAATTCTGGAGGGCCATTGCTTGA 921
Query 883 TTCTTATGGCCATACCATAGGCGTGAACACTGCCACATTCACCCGAAAAGGGAGTGGTAT 942
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 922 TTCTTATGGCCATACCATAGGTGTGAACACTGCCACATTCACCCGAAAAGGGAGTGGTAT 981
Query 943 GTCTTCTGGTGTGAACTTTGCTATTCCCATAAACACCGTAGTTCGAACAGTACCCTACCT 1002
|||||||||||| |||||||| |||||||| |||| || || |||||||| || |||||
Sbjct 982 GTCTTCTGGTGTTAACTTTGCCATTCCCATTGACACAGTTGTCCGAACAGTTCCGTACCT 1041
Query 1003 CATTGTGTATGGAACAGCTTACAGAGACAGATTCTGA-GAAAAACAAACATCTTCTTTGC 1061
||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||
Sbjct 1042 CATTGTGTATGGAACAGCTTATAGAGACAGATTCTGAAGTAAACCAAACATCTTCTTTGC 1101
Query 1062 A--------A--A-TTT-TCTATTGTTTGTTGATAATACAATTTGAAAAGTTTCAGACTT 1109
| | | ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1102 ATTTTGTCTATCACTTTGTCTATTGTTTGTTGATAATACAATTCGAAAAGTTTCAGACTT 1161
Query 1110 TTGGCTCTCTAAATGTAAATACAAAAA-TTCCAAT---GT----A-TGTATACATATTTT 1160
| ||||||||||||||||||||||| ||| || || | ||||||||||| |
Sbjct 1162 GT--CTCTCTAAATGTAAATACAAAAAGTTCAAAAACAGTTTCCAATGTATACATATATC 1219
Query 1161 TTCACGAAAACATGTGAATCATT 1183
||||| |||||||||||||||||
Sbjct 1220 TTCACAAAAACATGTGAATCATT 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5