BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493050
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18170.1 | Symbols: WRKY28, ATWRKY28 | WRKY DNA-binding prot... 1779 0.0
AT1G29860.1 | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding prot... 215 9e-55
> AT4G18170.1 | Symbols: WRKY28, ATWRKY28 | WRKY DNA-binding protein
28 | chr4:10061373-10062841 FORWARD LENGTH=1242
Length=1242
Score = 1779 bits (963), Expect = 0.0
Identities = 1141/1222 (93%), Gaps = 32/1222 (3%)
Strand=Plus/Plus
Query 1 AAAGTCCAAGCACCAATCTAGACCTTC-TAGGaaaaaaaCCTAAAAACCTAATCCCCAAA 59
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 AAAGTCCAAGCACCAATCTAGACC-TCTTAGGAAAAAAACCTAAAAACCTAATCCCCAAA 59
Query 60 CCTAAAAGGCTTATCTCCTCTCTTCTTCTTTGTCTTCTTTTA--Cttttttt---t-t-t 112
||||||||||||||||| ||||||||||||||||||| |||| |||||||| | | |
Sbjct 60 CCTAAAAGGCTTATCTCATCTCTTCTTCTTTGTCTTC-TTTACTCTTTTTTTACCTCTCT 118
Query 113 C-TC-----TCTTCACCATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCAT 166
| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 CTTCATTGTTCTTCACCATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCTT 178
Query 167 CATCGTTTTCCTTGCACGAAATGATGAATCTACCTACTTCAAATCCATCTTCTTATGGAA 226
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 CATCGTTTTCGTTGCACGAAATGATGAATCTGCCTACTTCAAATCCATCTTCTTATGGAA 238
Query 227 ATATCTCATCACAAAACGGTTTGT-ATCCATCTACTTACTCCTTCACCGATTGCCTCCAA 285
| || |||||||||||||||| | ||||||||||||| |||||||||||||| ||||||
Sbjct 239 ACCTCCCATCACAAAACGGTTT-TAATCCATCTACTTATTCCTTCACCGATTGTCTCCAA 297
Query 286 AGTTCTCCAGGAGCGTATGAATCTCTACTTCA-AAAATCTTTTGGTCTTTCTCCCTCTTC 344
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 298 AGTTCTCCAGCAGCGTATGAATCTCTACTTCAGAAAA-CTTTTGGTCTTTCTCCCTCTTC 356
Query 345 CTCAGAGGTTTTCAACTCTTCGATTGATCAAGAACCAAACCGTGATGTTACTAATGATGT 404
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 357 CTCAGAGGTTTTCAATTCTTCGATCGATCAAGAACCGAACCGTGATGTTACTAATGACGT 416
Query 405 AATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTGCATCTAATTCTTCATC 464
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 417 AATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTCCTTCTAATTCTTCCTC 476
Query 465 TAGTGAGGCTGATCATCCCGGGGAAGATTCCGGCAAGAGTAGGAGGAAACGAGAGTTAGT 524
||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 477 TAGTGAGGCTGATCACCCCGGTGAAGATTCCGGTAAGAGCCGGAGGAAACGAGAGTTAGT 536
Query 525 CGGagaagaagatcaaagttccaaaaaagttgggaaaacgaaaaagaatgaggtgaagaa 584
||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 537 CGGTGAAGAAGATCAAATTTCCAAAAAAGTTGGGAAAACGAAAAAGACTGAGGTGAAGAA 596
Query 585 acaaagagaGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACAAAGAGAGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGG 656
Query 645 TTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTA 716
Query 705 CTATAGATGTACAACGCAAAGGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTTCAAGA 764
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 717 CTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTCCAAGA 776
Query 765 TCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCT 836
Query 825 CCGGGGAAGTTCCGCGGCAGCTGCTATGTTCTCTGCAGATCTCATGACTCCAAGAAGCTT 884
|| |||||||| || || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 837 TCGAGGAAGTTCTGCCGCGGCTGCTATGTTCTCCGCAGACCTCATGACTCCAAGAAGCTT 896
Query 885 TGCACATGATATGTTTAGGACGGCGGCTTATACTAACGGTGGTTCTGCGGCGGCGGCGGC 944
|||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 897 TGCACATGATATGTTTAGGACGGCAGCTTATACTAACGGCGGTTCTGTGGCGGCGGC--- 953
Query 945 TTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATGCAAACCCTAGTTCTCA 1004
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 954 TTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATTCAAACCCTAGTTCTCA 1013
Query 1005 TCAAGAGTATCATCAAGGGGGTGAGTACGAGCTCTTGAGGGAGATCTTTCCTTCAATTTT 1064
|||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1014 CCAAGTGTATCATCAAGGGGGTGAGTATGAGCTCTTGAGGGAGATTTTTCCTTCAATTTT 1073
Query 1065 CTTCAAGCAAGAGCCTTGATCAATCATTGTTATAATTA-ACTA-ATT-TATTgagagaga 1121
||| ||||||||||||||||| ||||||||||||| || | || ||| ||| | | ||
Sbjct 1074 CTTTAAGCAAGAGCCTTGATCGATCATTGTTATAACTACA-TATATTATAT--ATATTGA 1130
Query 1122 gagagagaggtagagaaaaaaaa--CTTATATGTAACT-AAGATCTTATTTTGTCTCTCT 1178
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1131 GAGAGAGAGGTAGAGAAAAAAAAAACTTATATGTAACTTAAGATCTTATTTTGTCTCTCT 1190
Query 1179 TATTTGCATGTACATATTTTTT 1200
||||||||||||||||||||||
Sbjct 1191 TATTTGCATGTACATATTTTTT 1212
> AT1G29860.1 | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein
71 | chr1:10454482-10455785 FORWARD LENGTH=982
Length=982
Score = 215 bits (116), Expect = 9e-55
Identities = 178/208 (86%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 607 TTTATGACTAAAAGTGAAG-TTGATCATCTTGAAGATGGTTATAGATGGAGAAAATACGG 665
|||||||| ||||| | || ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 376 TTTATGACCAAAAGCG-AGATTGATCATCTTGAAGATGGTTATAGATGGCGAAAATATGG 434
Query 666 CCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTACTATAGATGTACAACGCA-AA 724
||||| || || || || |||||||||||||||||||||||||| || ||||| || ||
Sbjct 435 ACAAAAAGCAGTGAAGAACAGCCCTTATCCAAGGAGTTACTATAGGTGCACAACACAGAA 494
Query 725 GGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTTCAAGATCCAACGGTTGTGATTACAA 784
| || |||||||||||||| || |||||||||||||||||||| || | || |||||||
Sbjct 495 G-TGTAACGTGAAGAAACGTGTAGAGAGATCGTTTCAAGATCCGTCGATCGTAATTACAA 553
Query 785 CTTACGAGGGTCAACACAACCACCCGAT 812
| ||||| || |||||||||| |||||
Sbjct 554 CCTACGAAGGAAAACACAACCATCCGAT 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5