BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493056
Length=2726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18120.1 | Symbols: AML3, ML3 | MEI2-like 3 | chr4:10038126-... 2414 0.0
> AT4G18120.1 | Symbols: AML3, ML3 | MEI2-like 3 | chr4:10038126-10042248
FORWARD LENGTH=2724
Length=2724
Score = 2414 bits (1307), Expect = 0.0
Identities = 1722/1909 (90%), Gaps = 82/1909 (4%)
Strand=Plus/Plus
Query 860 CAAGCTAATTAAACGGAGGAAACTGGACATACATTTCTCAATCCCCAAGGATAATCCATC 919
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 818 CAAGCTGCTTAAAAAGAGGAAACTTGACATACATTTCTCAATCCCCAAGGATAATCCATC 877
Query 920 TGATAAAGATGTTAATCAAGGAACTCTTGTGGTTTTCAACTTGGCTCCATCAGTTTCCAA 979
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 AGAGAAAGATGTTAACCAAGGAACTCTTGTGGTTTTCAACTTGGCTCCATCAGTTTCCAA 937
Query 980 CAGAGACCTTGAAAATATATTCGGTGCTTATGGCGAGATCAAGGAGGTACGGGAAACACC 1039
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 938 CAGAGACCTTGAAAATATATTCGGTGTTTATGGCGAGATCAAGGAGATACGGGAAACACC 997
Query 1040 AAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTTAGATCAGCTGATGCAGCTCT 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTTAGATCAGCTGATGCAGCTCT 1057
Query 1100 CAAAGCTTTGAACAGGACTGACATTGCTGGAAAACGTATCAAGCTTGAACATAGTCGTCC 1159
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1058 CAAAGCTTTGAACAGGACAGAAATTGCTGGAAAACGTATCAAGCTGGAACATAGTCGTCC 1117
Query 1160 TGGTGGTGCTCGTCGAAACATGATGTTGCAAATGAATCCGGAATTGGAGCAAGATGATTC 1219
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1118 TGGTGGTGCTCGTCGAAACATGATGTTGCAAATGAATCCGGAATTGGAACAAGATGATTC 1177
Query 1220 CCACAGCTACCCGAATCATGTTGAGTCGCCTTTAGCAAGCTCTCCTCTAGGGAACAAGTG 1279
| ||||||||| ||||||||| ||||||||||| ||||||||||| |||| ||| ||
Sbjct 1178 CTACAGCTACCTGAATCATGTCGAGTCGCCTTTGGCAAGCTCTCCAATAGGAAAC---TG 1234
Query 1280 GTATAATAGTCCTGTTGATCATCCTCTACAAAGTTTCAGTAAGTCTCCAATATTTGGAAA 1339
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 GCGTAATAGTCCTATTGATCATCCTCTACAAAGTTTCAGTAAGTCTCCAATATTTGGAAA 1294
Query 1340 CTTGAGTCCAACAAAGAACATCCATTATCCAGAATTTTCGTCAATTATGCATTCTCAAGA 1399
||||||||||||||||||||||| |||||||||||||||| | | | | | || |
Sbjct 1295 CTTGAGTCCAACAAAGAACATCCGTTATCCAGAATTTTCG--A-TGAAG-A--CT---G- 1344
Query 1400 AGCAAATCCGATAAAGGCTGCATCGGTGAACAATGACCAAGAAGGAAGATGGTTTAGCCA 1459
|| || | | || | || | | ||| || | |||| ||| | ||||||||
Sbjct 1345 --CA--TCGG-TGAA--CA--AT-G---ACCAA-GA--AGGAAG-AAG--G-TTTAGCCA 1384
Query 1460 CTTGGATCACCTGTTTTCACGTAGCAGCTATAATAATGCAAGCCACAAAGCTTCTACCTT 1519
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 CTTGGATCACCTGTTTTCAAGTAGCAGCTATAATAATGCAAGCCACAAAGCTTCTACCTT 1444
Query 1520 TCAGCAACCACAGTCCTTTGGATCTGTTTCTTCATTTGGTTCTTTGAACTCACACCCGAG 1579
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1445 TCAGCAACCGCAGTCGTTTGGATCTGTCTCTTCATTTGGTTCTTTGAACTCACACCCGAG 1504
Query 1580 TCACGTAGAAACATTATCTGGATCAGAGTTCCTGTGGGGAAGCCCTAGTTCTTCAGCCTG 1639
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1505 TCATGTAGAAACATTATCTGGATCAGAATTCCTGTGGGGAAGCCCTAGTTCTTCAGCCTG 1564
Query 1640 GCCTGTGAATCCATTCTCTTCAAAC-GTAAAAAATAACAGGTTTTCTTACTCAGCTCAGA 1698
||||||||||||||||||||||||| | | ||||| |||||||| | |||||||||||||
Sbjct 1565 GCCTGTGAATCCATTCTCTTCAAACAG-AGAAAATCACAGGTTTCCGTACTCAGCTCAGA 1623
Query 1699 ACGGGTCGCTCCACCAGCTCCATCATGTTGGATCTGCGCCATCTGGATTCTTCCCGAGGT 1758
|||| || ||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 1624 ACGGATCCCTCCACCAGCTTCATCATATCGGATCTGCGCCATCTGGATTCTTCCCGAGGT 1683
Query 1759 CCCCTGAAACTTCATCAATGG---C--T---TT-CCGAGGAGCAAGTGGTCATATGAATT 1809
||||||||||||||||||||| | | || |||||||||||||||| ||||||||
Sbjct 1684 CCCCTGAAACTTCATCAATGGGTTCAGTGGCTTTCCGAGGAGCAAGTGGTAATATGAATG 1743
Query 1810 CTCAAAGAAACTTACGTGAAACTAGCTCTCCAAGATTT-AAAATGTTGTCTTCTCCAAGA 1868
||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1744 CTCAAAGGAACTTGCGTGAAACTAGCTCTCCAA-ATTTTAAAATGTTGTCTGCTCCAAGA 1802
Query 1869 CTTAGTCAATTGTTTACGGGCAATGGCTCTTACCACTTACCTGTTCCTACAATGGCTTCC 1928
| ||||||||||||||| |||||||||||||||| || |||| | ||||||||| ||||
Sbjct 1803 CGTAGTCAATTGTTTACAGGCAATGGCTCTTACCTCTGGCCTGCTGCTACAATGGTTTCC 1862
Query 1929 ATTGACGACCCATTGGAGGTTGGAAGGAACCAACAGTTTGATAGTAACGTTAACCAAGTC 1988
||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
Sbjct 1863 ATTGACGACCCATTGGAGGATGGAAGCAACCAACAGTTTGATAGTAACGGTAACCAAGCC 1922
Query 1989 GACATCAAGATACAGTTTCAGCTTGACTTGAGTAAGATTATGAGGGGTGAAGATCCACGG 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 GACATCAAGATACAGTTTCAGCTTGACTTGAGTAAGATTATGAGGGGTGAAGATCCACGG 1982
Query 2049 ACAACCTTGATGATAAAAAACATCCCTAATAAGTATACCCGGAATATGCTGTTAGCTGCC 2108
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1983 ACAACCTTGATGATAAAAAACATCCCAAATAAGTATACCCGGAATATGCTCTTAGCTGCC 2042
Query 2109 ATCGACGAGAAAAACAGTGGAACTTATGATTTTCTATATTTGCCTATTGATTTCAAGAAT 2168
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2043 ATCGACGAGAAAAACAGTGGAACTTATGATTTTCTTTATTTGCCTATTGATTTCAAGAAT 2102
Query 2169 AAATGTAATGTGGGGTATGCATTTATCAATATGGTGTCTCCTAAATTCATCATTGCACTG 2228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2103 AAATGTAATGTGGGGTATGCATTTATCAATATGGTGTCTCCTAAATTCACCATTGCATTG 2162
Query 2229 TACGAGGCCTTTAATGGaaaaaaaTGGGATAAGTTCAACAGCGAGAAAGTTGCTTCGTTG 2288
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2163 TACGAGGCCTTTAATGGAAAGAAATGGGATAAGTTCAACAGCGAGAAAGTTGCTTCATTG 2222
Query 2289 GCTTATGCACGAATCCAAGGTAAAGCTGCGCTTATTGCTCACTTTCAGAACTCGAGCTTG 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2223 GCTTATGCACGAATCCAAGGTAAAGCTGCGCTTATTGCTCACTTTCAGAACTCAAGTTTG 2282
Query 2349 ATGAACGAAGATAGGAGATGCCAACCTATTGTCTTTGATGGATCAGAATCTAAATATCCG 2408
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 ATGAATGAAGATAGGAGATGCCAACCTATTGTCTTTGATGGATCAGAATCTAAATATCCG 2342
Query 2409 ATCATCCGGGCGAATTCGCAGCTCGAGGCATCAAATTCAACGGTTTCTCATCCTGTAGTC 2468
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2343 ATCATCCGGGAGAATTCGCAGCTCGAGGCATCAAATTCAACGGTTTCTCATCCTCTTGTC 2402
Query 2469 AGCGAGGGCACGCATCAAAGCTGACAGTGAAGTGAATCCCATTATTTCCT-TCGGTTTAA 2527
||||| ||| |||||||||||||||| ||||||||| | ||||| ||| | |||||||
Sbjct 2403 GGCGAGAACACACATCAAAGCTGACAGTCAAGTGAATCACGTTATTGCCTCT-GGTTTAA 2461
Query 2528 AACGTAAATATCAGTTTTTAGGATGAGATGATGATGA-CTTTAGA-AAATTT-T-C-TGG 2582
||||||||||||||||| ||||||||||||||||||| | | | ||| | | | | |
Sbjct 2462 AACGTAAATATCAGTTTCTAGGATGAGATGATGATGAACAACA-ACAAACTACTACATAG 2520
Query 2583 TTTTCTC-AGAT-C-TTTCTGGTT------GTT--TG---GTTTCC-GGAATC-AGAA-- 2624
| || ||| | ||||||||| ||| | |||| | || ||| ||||
Sbjct 2521 TACCCTTTAGAAACATTTCTGGTTTTCTCAGTTCCTTCTAGTTTGCTGGTATCCAGAATT 2580
Query 2625 AGTA----TTATTTGATCTAGACATGTAAATTGATGGTTGTGtttt--ttttGTCCTGGT 2678
|| | ||||| | ||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 2581 AGAAAGAATTATT-GTTCTAGACATGTGAATTGATGGTTGTGTTTTACTTTTGTC-TGGT 2638
Query 2679 TGGCCAAATCATCTCTCCACAAT-GTATACATAGGATAGTTTAGATACA 2726
||||||||| ||||||||| ||| ||||||||||||||||| |||||||
Sbjct 2639 TGGCCAAATGATCTCTCCA-AATTGTATACATAGGATAGTTAAGATACA 2686
Score = 1020 bits (552), Expect = 0.0
Identities = 719/797 (90%), Gaps = 22/797 (3%)
Strand=Plus/Plus
Query 1 CTTCTCCATCCAATTAAAGATTCTCTCTTTTTAATAATGCTTTCAAAAGAAT-TC--A-- 55
||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 9 CTTCTCCATCCAATTAAAGATTCTCTC-TTTTAATAATGCTTTCAAAAGAATATCTAATT 67
Query 56 -C--GAATAATCAAtttttttATATTTATTTTCTCTCTTCTTTATCAATGTGtatatat- 111
| |||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 68 TCAGGAATAATCAA--AAACT-TATTTAATTTCTCTCTTCTTTATCAATGTGTATATATA 124
Query 112 atatataGAGTCAGA-GAGAAAGCGTTTCTTCTGTATTCGTGGGAGAGGAC-AA-ATTAT 168
||| | | | | | | |||||| ||||||||||||||||||||||| || || | |
Sbjct 125 ATACACACA-T-ATATAAGAAAGTGTTTCTTCTGTATTCGTGGGAGA-AACAAACAAAAA 181
Query 169 TGAAGTTCGTTGTTGCGAAGAAGCGGAGTTAATCGAAGTGCAGGGCTTTCGCAATGAATA 228
|| ||| || | |||||||||| || |||||| |||| ||| |||||| | |||||||
Sbjct 182 ACAATTTC-TTCTAGCGAAGAAGCAGAATTAATCAAAGTTCAGAGCTTTCACTATGAATA 240
Query 229 TCCCAAATGGAACCTTCTCAAGATCTGATCATTTCCATGCTTCAAGTGATGCTTCTCTCT 288
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCCAAGTGGAACCTTCTCAAGATCTGATCATTTCCATGCTTCAAGTGATGCTTCTCTCT 300
Query 289 TTTCCAGTTCTCTACCTGTTCTTCAACACCAAAACCTCAACCCTCGCG-CGAGCTACCAT 347
|||| || ||||| ||| || |||||||||||||| |||||||||| | | |||||||||
Sbjct 301 TTTCAAGCTCTCTTCCTCTTATTCAACACCAAAACATCAACCCTCGTGAC-AGCTACCAT 359
Query 348 CAGTCTGTTGATGAAATTGCTTCCGGCTTAAATCAATACAATGGAGGCATTGGCAATATG 407
||||||||||||||||| ||||| |||||| | || | | |||||||||||||||||||
Sbjct 360 CAGTCTGTTGATGAAATGGCTTCTGGCTTAGACCATTTTAGTGGAGGCATTGGCAATATG 419
Query 408 CTTGATGATGGTGAGTCACATCCAATCGGAAGCATGCTTCCCGATGATGAGGAAGAGCTT 467
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 420 CTTGATGATGGTGACTCACATCCAATCGGAAACATGCTTCCTGATGATGAGGAAGAGCTT 479
Query 468 TTCTCTGGTCTAATGGATGATTTAAACTTAAGTTCTTTGCCTGCTATGTTGGATGACTTG 527
||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 480 TTCTCTGGTCTAATGGATGATTTAAACTTAAGTTCCTTGCCAGCTACGTTGGATGACTTG 539
Query 528 GAAGATTATGATTTATTTGGTAGCGGAGGAGGGCTTGAACTGGAGACTGACCCATATGAC 587
||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct 540 GAAGATTATGATTTATTCGGTAGCGGAGGAGGTCTTGAATTGGAGACTGATCCATATGAC 599
Query 588 AGTCTAAACAAGGGCTTCTCAAGAATGGGTTTTGCTGATTCTAACGTTGACAATGGTATG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 AGTCTAAACAAGGGCTTCTCAAGAATGGGTTTTGCTGATTCTAACGTTGACAATGTTATG 659
Query 648 CCTCAAAACATTTTCCAAAATGGAGTGGGATCGATTGCTGGCGAACATCCTTATGGTGAA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCAAAACATTTTCCAAAATGGAGTGGGATCGATTGCTGGCGAACATCCTTATGGTGAA 719
Query 708 CATCCTTCAAGGACTCTGTTTGTTCGGAATATTAACAGTAACGTTGAGGATTCTGAATTG 767
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 CATCCTTCAAGGACTTTGTTTGTTCGGAATATTAACAGTAACGTAGAGGATTCTGAATTG 779
Query 768 CAAGCTCTTTTTGAGCA 784
|||||||||||||||||
Sbjct 780 CAAGCTCTTTTTGAGCA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135400579157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5