BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493104
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17730.2 | Symbols: SYP23, ATSYP23 | syntaxin of plants 23 ... 1408 0.0
AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syn... 597 8e-170
> AT4G17730.2 | Symbols: SYP23, ATSYP23 | syntaxin of plants 23
| chr4:9865103-9867022 FORWARD LENGTH=1342
Length=1342
Score = 1408 bits (762), Expect = 0.0
Identities = 948/1032 (92%), Gaps = 36/1032 (3%)
Strand=Plus/Plus
Query 1 TTTTTTCGTTCGTACAGGTAATGTGACATTTCACGTTTTG--C--GCTCTCTCTCCGCGA 56
||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 TTTTTCCGTTCATACAGGTAATGTGACATTTCACGTTTTGCTCAATCTCTCTCTCCGCGG 60
Query 57 TTCACG-TTTCTCTCAATCTGTCCGTGACTCCGGAGAGAGAGAACTCACCGGAGAATC-T 114
|||||| ||| |||||||||||||| || |||||||| |||||||||| ||||| |
Sbjct 61 TTCACGTTTTTTCTCAATCTGTCCG-GA-----GAGAGAGA-AACTCACCGGGGAATCTT 113
Query 115 GAAAATCACTGTCACGTTCTTTCCTCCGTCCATCTTCGTTACCG--TG-AAATCGAATTT 171
| ||||||| |||| | || || ||| || |||| ||||| || || |||||||| ||
Sbjct 114 G-AAATCACCATCACATCCTCTCTTCCCTCGATCTCCGTTATCGACTGTAAATCGAA-TT 171
Query 172 TTCGATT-TTGCTCTGTTTTCTT-GG-GAATAAAAGAGGATAATTTTAGTGGTGGGTTTT 228
|| | || ||||| ||||||||| || |||||||||||||||| |||||||| ||| |||
Sbjct 172 TT-G-TTGTTGCTTTGTTTTCTTGGGCGAATAAAAGAGGATAA-TTTAGTGGCGGGGTTT 228
Query 229 TCGAGAAAGAGAGAGAAAGAATGAGTTTTCAAGATTTAGAAGCGGGAAGAGGAAGATCAT 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 229 TCGAGAAAGAGAGAGAAAGAATGAGTTTTCAAGATTTAGAGGCGGGAAGAGGAAGATCAT 288
Query 289 TAGCTTCTTCAAGGAACACCAATGGTGGT-G--GTAGACAAGACACCACTCAAGCTGTTG 345
|||||||||||||||||| |||||||||| | ||||||||||||| ||||||| |||||
Sbjct 289 TAGCTTCTTCAAGGAACATCAATGGTGGTGGTAGTAGACAAGACACGACTCAAGATGTTG 348
Query 346 CTTCTGGTATATTTCAGATCAACACAAGTGTTTCCACTTTCCATCGTCTTGTCAACACTC 405
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 349 CTTCTGGTATATTTCAGATCAATACAAGTGTTTCCACTTTCCATCGTCTTGTCAATACTC 408
Query 406 TTGGTACTCCTAAAGACACACCTGAGCTTC-GAGAGAAGCTGCACAAGACAAGATTACAT 464
|||||||||||||||| || ||||||| || ||||||||||||| |||||||||||| ||
Sbjct 409 TTGGTACTCCTAAAGATACGCCTGAGC-TCAGAGAGAAGCTGCATAAGACAAGATTATAT 467
Query 465 ATTGGACAGCTAGTGAGAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCAT 524
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 ATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCAT 527
Query 525 CAAAGAGGTGTAAATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CAAAGAGGTGTAAATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAA 587
Query 585 GCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATAT 647
Query 645 GCTCCTCTTGTCCACAAGCCATCTCTTCCCTCAAGATATAGC-TACACAAT-AGAT-GAT 701
||||||||||||||||||||||||||||||||||| || | | | | || | |||| |||
Sbjct 648 GCTCCTCTTGTCCACAAGCCATCTCTTCCCTCAAGCTACA-CAT-C-CAGTGAGATAGAT 704
Query 702 GTGAATGGAGATAAGCAGCCAGAGCAGCGGGCCCTTCTTGTGGAATCAAAAAGACAAGAA 761
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 705 GTGAATGGAGATAAGCATCCAGAGCAGCGTGCCCTTCTTGTGGAATCAAAAAGACAAGAA 764
Query 762 CTTGTACTCTTGGACAATGAGATTGCGTTCAATGAGGCTATTATTGAGGAAAGAGAGCAA 821
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 765 CTTGTACTGTTGGACAATGAGATTGCGTTCAATGAGGCTGTTATTGAGGAAAGAGAGCAA 824
Query 822 GGGATACAAGAAATCCAGCAGCAAATTGGCGAGGTGCACGAAATCTTCAAAGACTTGGCA 881
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 825 GGGATACAAGAAATTCAGCAGCAAATTGGCGAGGTGCACGAGATCTTCAAAGACTTGGCA 884
Query 882 GTGTTGGTACACGATCAAGGAACCATGATTGATGATATTGGTACTCACATCGATAACTCC 941
|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 885 GTGTTGGTGCACGATCAAGGAAACATGATAGATGATATTGGTACTCACATCGATAACTCT 944
Query 942 TACGCTGCAACTGCTCAAGGAAAATCCCATCTCGCAAAAGCCTCAAAGACACAAAGATCA 1001
|||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||
Sbjct 945 TACGCTGCAACTGCCCAAGGAAAATCCCATCTCGTAAG-GCATCAAAGACACAAAGATCA 1003
Query 1002 AATTCTTCTCTG 1013
||||||||||||
Sbjct 1004 AATTCTTCTCTG 1015
Score = 230 bits (124), Expect = 4e-59
Identities = 168/187 (90%), Gaps = 11/187 (6%)
Strand=Plus/Plus
Query 1075 CTGTTTGATTTACCCAAGCTCATAAAAGTATGGACAAGTGATTCATCATCAATCAAGAAG 1134
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1013 CTGTTTGATTTCCCCAAGCTCATAAAAGCATGGACAAGTGCTTCATCATCAATCAAGAAG 1072
Query 1135 CATCAATGAGTATATGTTTGTCATTTCACGGCTCTCTTTGTTCCTACCATTTAGTCTGTT 1194
||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||
Sbjct 1073 CATCAATGAGTATATGTTTGTCA---C--GACTCTCTTTGTTCCTACAATTTAGTCTGTT 1127
Query 1195 GGACTATTGGTCTCTCGTTTTCCTGTTATCGAGTTGAGTATATAGAGTAGTTCGCTTTGG 1254
||||||||||||||| |||| | ||||||||||| | |||| ||||||||| ||||||
Sbjct 1128 GGACTATTGGTCTCTTGTTT-CTTGTTATCGAGT--A-TATA--GAGTAGTTCACTTTGG 1181
Query 1255 TTTGATT 1261
|||||||
Sbjct 1182 TTTGATT 1188
Score = 108 bits (58), Expect = 2e-22
Identities = 78/87 (90%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 1260 TTGTCTCTGTAATAT-ATTTTGTTGCAT-AGGGAAAATCCTCTGTTTGTGTTCTTAAATG 1317
||||||||||||||| | || ||| | | | |||||||||||||||||||||||||||||
Sbjct 1238 TTGTCTCTGTAATATAACTTGGTT-C-TGAAGGAAAATCCTCTGTTTGTGTTCTTAAATG 1295
Query 1318 TGAAATTCCTGGTTTCGATTAGTTAAA 1344
||||||| |||||||||||||| ||||
Sbjct 1296 TGAAATTTCTGGTTTCGATTAGCTAAA 1322
> AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE
family protein | chr5:19012021-19014004 REVERSE
LENGTH=1337
Length=1337
Score = 597 bits (323), Expect = 8e-170
Identities = 687/855 (80%), Gaps = 56/855 (7%)
Strand=Plus/Plus
Query 245 AAGAATGAGTTTTCAAGATTTAGAAGCGGGAAGAGGAAGATCATTAGCTTCTTCAAGGAA 304
||| ||||||||||||||||||||| | ||||||||||||||| | | |||||
Sbjct 207 AAG-ATGAGTTTTCAAGATTTAGAATCAGGAAGAGGAAGATCA--A-------CGAGGAA 256
Query 305 CA-CCAATGGTGGTGGTAGACAAGACACCACTCAAGCTGTTGCTTCTGGTATATTTCAGA 363
| ||| ||||||| ||||||| | || ||||| ||||||||||| ||||| ||||
Sbjct 257 -ATTCAA---TGGTGGTCGACAAGATTCGACACAAGCCGTTGCTTCTGGAATATTCCAGA 312
Query 364 TCAACACAAGTGTTTCCAC-TTTCCATCGTCTTGTCAACACTCTTGGTACTCCTAAAGAC 422
|||| || | || ||||| ||| || || || || ||||| ||||||||||| |||||
Sbjct 313 TCAATACCGGAGTCTCCACGTTT-CAGCGACTCGTTAACACACTTGGTACTCCCAAAGAT 371
Query 423 ACACCTGAGCTTCGAGAGAAGCTGCACAAGACAAGATTACATATTGGACAGCTAGTG-AG 481
||||| ||||| || |||||||||||||||||||| || |||||||||||||| ||| ||
Sbjct 372 ACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAG 431
Query 482 AGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATCA 541
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 432 -GATACTTCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGCGGTGTCAATCC 490
Query 542 AAAG-AAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAAGCTGTGTTGAAAGAGT 600
|| | |||||||||| |||||||||||||||| ||||||||||||||| || |||||||
Sbjct 491 AA-GTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTCAAGCTGTTTTAAAAGAGT 549
Query 601 TTCA-AAAGGCTCAGCGT-CTTGCTGCTGAAAGAGAAACCG-TATATGCTCCTCTT-GT- 655
|||| |||| |||| | || |||||||||||||||||| | ||| ||||| || ||
Sbjct 550 TTCAGAAAG-CTCAACAAACT-GCTGCTGAAAGAGAAACCACT-TATACTCCT-TTCGTG 605
Query 656 CCACAAGCCATCTCTTCCCTCAAGATATAGCTACACAATAGATGATGTGAATGGAGATAA 715
|| ||| | |||||||||| || |||| | | | ||| | | |||| |||
Sbjct 606 CCTCAATCTG-CTCTTCCCTCTAGCTATA-CGGCGG----G-TGA-G-G--TGGA--TAA 652
Query 716 GC-AGCCAGAGCAGCGGGCCCTTCTTGTGGAATCAAAAAGACAAGAACTTGTACTCTTGG 774
| | || || |||||||| | ||| ||| || |||||||||||||||||| | || |
Sbjct 653 GGTA-CCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGACAAGAACTTGTATTGTTAG 711
Query 775 ACAATGAGATTGCGTTCAATGAGGCTATTATTGAGGAAAGAGAGCAAGGGATACAAGAAA 834
|||| |||||||| ||||| |||||| | ||||| |||||||||||||| ||||||||||
Sbjct 712 ACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAAA 771
Query 835 TCCAGCAGCAAATTGGCGAGGTGCACGAAATCTTCAAAGA-CTTGGCAGTGT-TGGT-AC 891
|||| ||||||||||| ||||| |||| || |||||||| |||| | || | |||| |
Sbjct 772 TCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTG-CGGT-TCTGGTTA- 828
Query 892 ACGATCAAGGAACCATGATTGATGATATTGGTACTCACATCGATAACTCCTACGCTGCAA 951
||||||||||| |||||| |||||||||||||||||||| || |||||| |||||||
Sbjct 829 ACGATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAA 888
Query 952 CTGCTCAAGGAAAATCCCATCTCGCAAAAGCCTC-AAAGACACAAAGATCAAATTCTTCT 1010
|| | ||||||||||| || || | ||||| | ||| ||||||| |||||| || |||
Sbjct 889 CTTCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAA-ACACAAAAATCAAACTCCTCT 947
Query 1011 CTGGTAATGTGCTTGCTCTTGGTGATTTTTGGTATCGTGCTCCTGATTGTTATTATAGTG 1070
||| | || ||||||||||||||| ||||| || || |||||||| || ||||||||
Sbjct 948 CTGACA-TG--CTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGTA 1004
Query 1071 CTCGCTGTTTGATTT 1085
||||| | |||||||
Sbjct 1005 CTCGCAGCTTGATTT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5