BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493129
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17483.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1404 0.0
> AT4G17483.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:9747344-9748892 REVERSE LENGTH=934
Length=934
Score = 1404 bits (760), Expect = 0.0
Identities = 859/908 (95%), Gaps = 2/908 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGTGTTTCCGGCGGTCTGTTCTCCTTTCCACGGTGATCGCCGCCATGTTATTC 60
|||||||||| || |||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1 ATGGAGAAGTATTCCCGGCGGTCTATTCTCCTTTCCACGGTGGTCGCCGCCGTGTTATTC 60
Query 61 TCTTTTATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTAATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAA 120
Query 121 TGTTCTGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCTCTCCTGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTTCTGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCTCTCCTGGC 180
Query 181 T-TCTGCTTAGAAATAGGAAACGGAGAAAAGGACTCATGGTTCATGCCATTGATAAAGCA 239
| | ||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||
Sbjct 181 TAT-TGCTTAGAAATAGGAAATGGAGAAAAGGACTCATGGTTCATGCCACTAAGAAAGCA 239
Query 240 AACTAGTTTAGCGTGTGAGAAAGTGAAAACGATGAAAGAGTTGAGTCAAGGTTACAACAT 299
||| ||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 240 AACAAGTGTAGCGTGTGAGAAAGTGAAAGCGATGAAAGTGTTAAGTCAAGGTTACAACAT 299
Query 300 TGTCGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGATAATGC 359
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 TGTTGCAGAGTCTCAAGGAAACTTAGTTGCTAGAGGACTAATCGAGTTCTGCGATAATGC 359
Query 360 TCCTCCTGTCATTAACTATATCTCCTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCCC 419
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTCCTGTTATAAACTATATCTCTTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCCC 419
Query 420 CAAGTGTGCTTCTGGTCCAATATGTGATATTGGTGAAGCTATGTTGAAGTTAGAGGTCTA 479
|||||| |||||| |||||||||| || ||||||||| |||||||||||||||||||
Sbjct 420 TAAGTGTAATTCTGGCCCAATATGTGCGATAGGTGAAGCTTTGTTGAAGTTAGAGGTCTA 479
Query 480 TACTGACTTCGTACAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGGTGAAAT 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACTGACTTCGTTCAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGGTGAAAT 539
Query 540 CTCAAAGTATTTGGAACACTCAAAGTATCTACCAAAGGTTAACAATGAGAGACCTGACGA 599
|||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 540 TTCAAAGTATTTGGAGCACTCCAAGTATCTACCAAAGCTTAACAATGAGAGACCTGACGA 599
Query 600 AAGAAACTCCACTTTCAAAGACCGATTCACTAAGTTACACAACTTAGTTCTTGTCATGTT 659
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 600 AAGAAACTCTACTTTCAAAGACCGATTCACTAACTTACACAATTTAGTTCTTGTCATGTT 659
Query 660 CGAGAGCGATACAACATTAATCCCTAAAGAAACTGCATGGTTTGGATATTATGAAGATGA 719
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 CGAGAGCGATACAATGTTAATCCCTAAAGAAACTGCATGGTTTGGTTATTATGAAGATGA 719
Query 720 AGGATTTGATACTCTTTTGTCAACTCAACAGACAAAGTTGTACAGAGAAGATTGGATTGG 779
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGATTCGATACCCTTTTGTCAGCTCAACAGACAAAGTTGTACAGAGAAGATTGGATTGG 779
Query 780 TCTGAAAGCATTGGATGTTGCCGGAAAAGTGAAGTTTGAAAGTGTGTTAGGGGACCATCT 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TCTGAAAGCATTGGATGCTGCCGGAAAAGTGAAGTTTGAAAGTGTGTTAGGGGACCACCT 839
Query 840 CAGTATATCGGATGAGGAGGTTGTGGAATATGTTGTGCCTTACTTAATGCAAAGCTGTAT 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 840 CAGTATATCGGATGAGGAGGTTGTGGAATTTGTTGTGCCTTACTTAATGCAAAACTGTAT 899
Query 900 GTGAATTT 907
||||||||
Sbjct 900 GTGAATTT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5