BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493149
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17260.1 | Symbols: | Lactate/malate dehydrogenase family p... 1812 0.0
> AT4G17260.1 | Symbols: | Lactate/malate dehydrogenase family
protein | chr4:9673991-9675448 FORWARD LENGTH=1267
Length=1267
Score = 1812 bits (981), Expect = 0.0
Identities = 1176/1267 (93%), Gaps = 25/1267 (2%)
Strand=Plus/Plus
Query 15 gaagaaagaaacagaagaaTCATCAAATCAAATCAAATCCCTAAAAATTGA--TCTGCAA 72
|||| ||||||||| || | ||| ||||||||||||||||||||||||| | || ||
Sbjct 15 GAAG-AAGAAACAG-AG-A--ATC--ATCAAATCAAATCCCTAAAAATTGATTTTTGAAA 67
Query 73 TGGAGAAAAACGCATCGACTTCATCGTTGAAGGACTTAGGTCCGAGTGGTCTAGATCTAA 132
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 68 TGGAGAAGAACGCATCGACTTCGTCGTTGAAGGACTTGGGTCCGAGTGGTCTAGATCTAA 127
Query 133 CCAGCGCCTTTTTCAAACCGATCCACAACTGCGCTCCTTCTCTCCCTTCAAACCGACGTA 192
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 128 CCAGCGCCTTTTTCAAACCGATCCACAACTCCGATCCTTCTCTCCCTTCAAACCGACGTA 187
Query 193 CCAAAGTCTCCGTCGTCGGAGTCGGTAACGTCGGAATGGCCATCGCTCAAACCATCCTCA 252
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 188 CCAAAGTCTCCGTCGTCGGAGTCGGAAACGTCGGAATGGCCATAGCTCAAACCATCCTCA 247
Query 253 CTCAAGATCTCGCCGACGATATCGCTCTCGTCGACGCTAAGCCTGATAAGCTTCGTGGCG 312
||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||||
Sbjct 248 CTCAAGATCTCGCAGACGAGATCGCTCTCGTTGACGCCAAACCCGATAAGCTTCGTGGCG 307
Query 313 AGATGCTCGATCTCCAGCACGCCGCTGCTTTCCTCCCTCGAACCAAAATCACCGCTTCCG 372
| ||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 308 AAATGCTTGATCTCCAACACGCCGCTGCTTTCCTCCCTCGAACTAAGATCACCGCTTCTG 367
Query 373 TTGATTACGAAGTCACCGCTGGATCTGATCTTTGTATCGTCACTGCTGGTGCTAGACAAA 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 368 TTGATTACGAAGTCACCGCTGGATCTGATCTTTGTATCGTCACTGCTGGTGCTAGACAGA 427
Query 433 ATCCAGGCGAGTCTAGACTCAATTTGCTTCAGAGGAACGTCGCTCTCTTCCGTCATATCA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATCCAGGCGAGTCTAGACTCAATTTGCTTCAGAGGAACGTCGCTCTCTTCCGTCATATCA 487
Query 493 TTCCTCCACTCGCTAAAGCTTCTCCTGATTCAATCTTGATTATTGTTTCTAATCCTGTCG 552
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |
Sbjct 488 TTCCTCCACTCGCTAAAGCTTCTCCTGATTCTATATTGATCATTGTTTCTAATCCCGTTG 547
Query 553 ATGTTTTGACTTACGTTGCTTGGAAACTCTCTGGTTTTCCGGTGAATCGAGTTCTTGGAT 612
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 548 ATGTTTTGACTTACGTTGCTTGGAAACTCTCTGGCTTTCCGGTGAATCGGGTGCTTGGAT 607
Query 613 CTGGTACTAATCTCGATTCCTCTCGGTTCCGGTTCTTAATCGCAGATCATCTCGATGTTA 672
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 608 CTGGTACTAATCTCGATTCTTCTCGGTTCCGATTCTTAATCGCAGATCATCTCGACGTTA 667
Query 673 ATGCTCAGGATGTACAGGCATTTATCGTGGGAGAGCATGGAGACAGCTCGGTGGCATTGT 732
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 668 ATGCTCAGGATGTACAGGCATTTATTGTGGGAGAGCATGGAGACAGCTCAGTGGCATTGT 727
Query 733 GGTCGAGCATAAGTGTTGGAGGCATTCCTGTCCTAAGCTTTCTGGAGAAGCAAC-AGATA 791
|||| ||||| ||||||||||||||||||||| |||||||| |||||||| ||| |||||
Sbjct 728 GGTCAAGCATTAGTGTTGGAGGCATTCCTGTCTTAAGCTTTTTGGAGAAG-AACCAGATA 786
Query 792 GCTTACGAGAAACAAACTCTTGAGGACATCCACCAAGCTGTAGTTGGCAGCGCCTATGAA 851
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 787 GCTTACGAGAAACAAACTCTTGAGGATATCCACCAAGCTGTTGTTGGTAGCGCCTATGAA 846
Query 852 GTGATTGGACTCAAGGGTTACACTTCTTGGGCCATTGGCTACTCAGTTGCTAATCTGGCT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTGATTGGACTCAAGGGTTACACTTCTTGGGCCATTGGCTACTCAGTTGCTAATCTGGCT 906
Query 912 CGCACTATCCTCCGTGACCAGCGCAAGATCCACCCAGTTACGGTCCTTGCTCGTGGCTTT 971
|| |||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 907 CGTACTATCCTCCGTGACCAGCGCAAGATCCACCCGGTTACTGTTCTTGCTCGTGGATTT 966
Query 972 TATGGAGTTGATGGCGGTGATGTCTTCCTCAGTCTCCCGGCTTTGCTTGGACGGAATGGT 1031
||||| |||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 967 TATGGTGTTGATGGTGGTGATGTTTTCCTCAGTCTTCCGGCTTTGCTTGGAAGGAATGGT 1026
Query 1032 GTGGTTGCTGTGACAAATGTGCATATGACTGATGAAGAGTCTGAGAAGCTGCAGAAGTCG 1091
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1027 GTGGTTGCTGTGACCAATGTGCATATGACTGATGAAGAGGCTGAGAAGCTGCAGAAATCG 1086
Query 1092 GCAAAGACTATATTGGAGATGCAGAGCCAATTGGGACTTTGAAAATCCACATCTATAT-- 1149
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1087 GCAAAGACTATATTGGAGATGCAGAGCCAATTGGGACTTTGAATATCCACATCTATATAT 1146
Query 1150 GCTTCAATTTTATAACTATTGTTTTGTTATGATCATTACCCCACGGGTGATAGTGTCAAT 1209
|| ||||||| | | | || | | || | | || ||| ||||||||||||||| ||
Sbjct 1147 GCATCAATTTCA-A--T-TT-TATAACTA-G-T-AT--CCC-ACGGGTGATAGTGTCGAT 1195
Query 1210 GTTGATCTCTATATGTTATGTAAATG-TTGTTCATGCAGAATAATCCCAACTTTGAGTTC 1268
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1196 GTTGATCACTATATGTTATGTAAATGCTTGTTCATGCAGAGTAATCCCAACTTTGAGTTC 1255
Query 1269 TCTTTTG 1275
| |||||
Sbjct 1256 TATTTTG 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5