BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493208
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16690.1 | Symbols: ATMES16, MES16 | methyl esterase 16 | ch... 1362 0.0
> AT4G16690.1 | Symbols: ATMES16, MES16 | methyl esterase 16 |
chr4:9392147-9393529 REVERSE LENGTH=1152
Length=1152
Score = 1362 bits (737), Expect = 0.0
Identities = 849/903 (94%), Gaps = 8/903 (1%)
Strand=Plus/Plus
Query 1 GTTATCTCCAAACTGTGGACCAAAACTGCATTCA-GTGTTGACTAGTTGAG-T-GTGTAC 57
|||||||||||||||||||||||||||||| | | ||||| | || |||| | |||||
Sbjct 25 GTTATCTCCAAACTGTGGACCAAAACTGCA-TAACGTGTT-AAAAGGTGAGATAGTGTA- 81
Query 58 AAAGCATAGATCAAGATTCATGCAATGGGAGGAGATGGTGGTGCTGATCCCGTAATTCAC 117
||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 82 AAAGCATTGATCAAGATTCATGCAATGGGAGGAGAAGGTGGTGCTGAGCCCGTAATTCAC 141
Query 118 TTTGTGTTTGTTCATGGAGCCAGTCACGGAGCTTGGTGTTGGTATAAACTCACCACTCTT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTTGTGTTTGTTCATGGAGCCAGTCACGGAGCTTGGTGTTGGTATAAACTCACCACTCTT 201
Query 178 CTCGACGCCGCCGGATTCAAATCCTCCTCCGTGGACCTCACCGGCGCTGGCATCAGCCTC 237
|||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 202 CTCGACGCCGCCGGGTTCAAATCAACCTCCGTAGATCTCACCGGCGCTGGCATCAGCCTC 261
Query 238 ACCGACTCTAACACCGTAATGGACTCTGACCAATATAACCGTCCTCTCTTCACTCTCTTG 297
| |||||||||| ||| | ||||| |||||||||||||||||||||||| ||||||||
Sbjct 262 ATAGACTCTAACATCGTCTTCGACTCCGACCAATATAACCGTCCTCTCTTCTCTCTCTTG 321
Query 298 TCCGATCTCCCTCCTCACCACAAAGTCATACTCGTTGGACATAGCATCGGCGGAGGAAGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 322 TCCGATCTCCCTCCTCACCACAAAGTCATACTCGTTGGACATAGCATCGGTGGAGGAAGT 381
Query 358 GTCACCGAAGCTCTTTGCAAGTTCACAGACAAAATCTCCATGGCCATTTACCTCGCAGCT 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 382 GTCACCGAAGCTCTTTGCAAGTTCACTGACAAAATCTCCATGGCCATTTACCTCGCGGCT 441
Query 418 GCCATGGTTCAACCCGGATCCATCCCTTCTCCAAATCTTTCAAACTTTCATGTGGGAGAA 477
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 442 TCCATGGTTCAACCCGGATCCATCCCTTCTCCGCATCTTTCAAACATACATGTGGGAGAA 501
Query 478 GAAGAAATATGGGAGTACATATATGGTGAAGGTGCCGATAAGCCACCCACTGGCA-TCCT 536
||||| ||||||||||||| ||||||||||||| ||||||| |||||||| || | ||||
Sbjct 502 GAAGATATATGGGAGTACACATATGGTGAAGGTACCGATAAACCACCCACCGG-AGTCCT 560
Query 537 CATGAAGCAGGAGTTTAGACGCCATTATTACTATAGCCAAAGCCCTCTTGAGGACGTAAC 596
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CATGAAACCGGAGTTTATACGCCATTATTACTATAGCCAAAGCCCTCTTGAGGACGTAAC 620
Query 597 TTTGTCATCTAAGCTGTTGCGTCCTGCTCCTGTGAGGGCCTTTCAAGATCTTGGTAAGCT 656
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 621 TTTGTCATCTAAGCTGTTGCGTCCTGCTCCTATGAGGGCCTTTCAAGATCTTGATAAGCT 680
Query 657 GCCTCCAAATCCCGAGGCCGAGAAAGTTCCTCGAGTGTACATCAAGACTGCTAAGGATAA 716
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 681 ACCTCCAAATCCCGAGGCCGAGAAAGTTCCTCGAGTTTACATCAAGACTGCTAAGGATAA 740
Query 717 TCTATTTGATTCTGTGCGTCAAGACCTTTTGGTGGAGAATTGGCCACCTTCTCAGTTGTA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 741 TCTATTTGATTCTGTGCGTCAAGACCTTTTGGTGGAGAATTGGCCACCTTCTCAGCTGTA 800
Query 777 TGTCTTGGAGGAGAGTGACCATTCTGCTTTCTTCTCTGTCCCAACTACCTTATTCACGTA 836
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 801 TGTCTTGGAGGATAGTGACCATTCTGCTTTCTTCTCTGTCCCAACTACCTTATTCGCGTA 860
Query 837 TCTCCTCCGTGCGGTTTCTTTTCTTCAACGATAAACTTAAACGTATCCTTCCTACATTCC 896
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 861 TCTCCTCCGTGCGGTTTCTTTTCTTCAACGATAAACTTCAACTTATCCTTCATACATTCC 920
Query 897 GAT 899
|||
Sbjct 921 GAT 923
Score = 202 bits (109), Expect = 6e-51
Identities = 129/139 (93%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 900 TTTATGTTATTTGATTTGAGTTTGAATAAGCTTTACATGTGAAGCAATCCGGGGTAAGAG 959
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1009 TTTATGTTATTTGATTTGAGTTTGAATAAGCTTTACATGCGAAGCAATCCAGGGTAAGAG 1068
Query 960 AGACAGATATCTCCTTGTAGGGGATTATTATTGGTATCCTTGGTTTCTTTTTATCAATAA 1019
||| ||| ||||||||||| ||| | ||||| ||||||||||||||||||| |||||||
Sbjct 1069 AGATAGAAATCTCCTTGTAAAGGAATGTTATTTGTATCCTTGGTTTCTTTTTGTCAATAA 1128
Query 1020 ATCTATCATAGTAGCTAAG 1038
|||||||||||||||||||
Sbjct 1129 ATCTATCATAGTAGCTAAG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5