BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493259 Length=598 Score E Sequences producing significant alignments: (Bits) Value AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases... 876 0.0 AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases... 366 1e-100 > AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases M/15 Kd subunit | chr4:9202352-9204078 REVERSE LENGTH=625 Length=625 Score = 876 bits (474), Expect = 0.0 Identities = 537/567 (95%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 1 CTCTCTCATGTCCGAGTGAACAAATCCCGCCAAAGATACTG-AGAGACTGATTGTGAAAT 59 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 2 CTCTCTCATGTCCGAGTGAACAAATCCCGCCAAAGATAC-GAAGAGACTGATTGTGAAAT 60 Query 60 CAAAGAAGTACTCAAAAGCTCGTTATATAAAGAAAGATTCTGCGAAGATGAGTACTATGA 119 |||||||| | ||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 61 CAAAGAAGCATTCAAAAGCTCGTTATCT----AAAGATTCTGCGAAGATGAGTACTATGA 116 Query 120 AATTTTGTCGTGAATGTAATAACATTCTATATCCTAAGGAAGACAAGGAGCAATCAATCC 179 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 117 AATTTTGTCGCGAATGTAATAACATTCTATATCCCAAGGAAGACAAGGAGCAATCAATCC 176 Query 180 TCCTCTATGCGTGTCGTAATTGTGATCACCAGGAAGCAGCGGATAACAACTGTGTTTACA 239 ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 177 TCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGCAGCAGATAACAATTGTGTTTACA 236 Query 240 GAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAAATCCTATCCGACGTTGCTTCTG 299 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 237 GAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAGATCCTATCTGACGTTGCTTCCG 296 Query 300 ACCCAACTCTTCCACGTACCAAGGCAGTGCGGTGTGCCAAGTGTCAACACGGCGAAGCTG 359 ||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||| Sbjct 297 ACCCAACTCTTCCACGTACCAAGGCTGTGCGATGCGCCAAGTGTCAACACGGTGAAGCTG 356 Query 360 TCTTCTTCCAGGCCACTGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCA 419 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TCTTCTTCCAGGCCACGGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCA 416 Query 420 ACCCGAACTGTAGTCACCGTTGGAGAGAATAGAATGATAGAAGACTACATTTTTCAAATG 479 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 417 ACCCGAACTGTAGTCACCGTTGGAGAGAATAGATTGATAGAAGACTACATTTTTCAAATG 476 Query 480 TAACGTGTATCTGAGTTCCTCTTTATGAGTTTCATACAATTCAATTTGGAGTTTTCTGTG 539 |||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 477 TAACGTGTATTTGTGTTCCGCTTTATGAGTTTTATACAATTCAATTTGGAGTTTTCTGTG 536 Query 540 TAAAAATATGAATACTACGGGAGTGTT 566 ||||||||||||||||| | || |||| Sbjct 537 TAAAAATATGAATACTATGAGACTGTT 563 > AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases M/15 Kd subunit | chr3:5794436-5795827 FORWARD LENGTH=563 Length=563 Score = 366 bits (198), Expect = 1e-100 Identities = 309/362 (85%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 94 AGATTCTGCGAAGATGAGTACTATGAAATTTTGTCGTGAATGTAATAACATTCTATATCC 153 |||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 78 AGATTCAGCTAAGATGAGTACTATGAAATTTTGCCGCGAATGTAATAACATTCTGTATCC 137 Query 154 TAAGGAAGACAAGGAGCAATCA-ATCCTCCTCTATGCGTGTCGTAATTGTGATCACCAGG 212 |||||| ||||| || | | | |||||||||||||| || ||||||||||||||||||| Sbjct 138 TAAGGAGGACAAAGAAC-AGAAGATCCTCCTCTATGCTTGCCGTAATTGTGATCACCAGG 196 Query 213 AAGCAGCGGATAACAACTGTGTTTACAGAAACGAGGTTCATCACTCTGTAAGTGAACAAA 272 | | ||| ||||||| |||||| |||||||||||||||||||||||||||||||| | || Sbjct 197 AGGTAGCTGATAACAGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAA 256 Query 273 CTCAAATCCTATCCGACGTTGCTTCTGACCCAACTCTTCCACGTACCAAGGCAGTGCGGT 332 |||| ||| || | ||||| ||||||||||| |||||||| || |||||||| ||||| | Sbjct 257 CTCAGATCTTAACAGACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCG-T 315 Query 333 GTGC-C-AAGTGTCAACAC-GGCGAAGCTGTCTTCTTCCAGGCCACTGCTAGAGGCGAAG 389 ||| | |||||||| || || || || || ||||||||||| || |||||||| |||| Sbjct 316 -TGCTCTAAGTGTCAGCATAGG-GAGGCCGTTTTCTTCCAGGCTACGGCTAGAGGTGAAG 373 Query 390 AAGGAATGACTCTGTT-TTTCGTTTGCTGCAACCCGAACTGTAGTCACCGTTGGAGAGAA 448 |||||||||| ||||| ||| || || ||||||||||| ||| |||| || ||||||||| Sbjct 374 AAGGAATGACACTGTTCTTT-GTCTGTTGCAACCCGAATTGTGGTCATCGCTGGAGAGAA 432 Query 449 TA 450 || Sbjct 433 TA 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28784166231 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5