BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493283

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15990.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   571    1e-162


> AT4G15990.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G16024.1); 
Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9061269-9061676 
REVERSE LENGTH=408
Length=408

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 366/394 (93%), Gaps = 2/394 (1%)
 Strand=Plus/Plus

Query  1    AAGGATAGGAATACAAAGATCGCTCAAAAGGCTTTTGAAATGGTCGACAAGGTGTATGGT  60
            |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  10   AAGGATAGGAATACAAGGATAGCTCAAAAGGCTTTTGAAATGGTCGATAAGGTGTATGGT  69

Query  61   AAGTCTCCAAAACTAACCACTAAACCATATGATCCTAAAGGCGAGTTCCCTTCTCATTTT  120
            ||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||  |||
Sbjct  70   AAGTCCCCAAACCTAACCACTAAACCATATGATCCTAAAGACGAGTCCCCTTCTCGCTTT  129

Query  121  AGCCAAAGTGCTTACAAATATGATGGTCCACAAATTTATACCGTAAGAGAGGCGACTAGT  180
            | |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct  130  ACCCAAAGTGCTTACAAATATGGTGGTCCAAAAATCTATACCGTAAGAGAGGCGACTAGT  189

Query  181  AC-TACTAGTTGTGGTCGAGCTATTTATACGTACTCACATGAGTCAACTATAAAAGAACC  239
            || || ||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct  190  ACTTA-TAGTTATGGTCGAGCTATTTATATGTACGCACCTGAGTCAACTATAAAAGAACC  248

Query  240  TGTTCTTTCTCACCCCACAGAACATATTCAATACTTTGGTGGTACCCGTCCTTTTGTTGG  299
            |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  249  TGTTGTTTCTCACCCCACAGAACATATTCAATACTATGGTGGTACCCGTCCTTTTGTTGC  308

Query  300  CAATCCCAACCGGTTTGAGACGCCAAAAGGACGAGTTATTAACTGTGACGAGGCGGTCCA  359
            |||||||||| ||||||||| ||| |||||||| ||||||||||| || |||||||||||
Sbjct  309  CAATCCCAACAGGTTTGAGAGGCCGAAAGGACGGGTTATTAACTGCGATGAGGCGGTCCA  368

Query  360  ACTCTATGGAGGGGTGCTTATAAAGGAATTTCGT  393
            ||||||||||||||||||||||||||||||||||
Sbjct  369  ACTCTATGGAGGGGTGCTTATAAAGGAATTTCGT  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5