BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493283 Length=393 Score E Sequences producing significant alignments: (Bits) Value AT4G15990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 571 1e-162 > AT4G15990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16024.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9061269-9061676 REVERSE LENGTH=408 Length=408 Score = 571 bits (309), Expect = 1e-162 Identities = 366/394 (93%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 1 AAGGATAGGAATACAAAGATCGCTCAAAAGGCTTTTGAAATGGTCGACAAGGTGTATGGT 60 |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| Sbjct 10 AAGGATAGGAATACAAGGATAGCTCAAAAGGCTTTTGAAATGGTCGATAAGGTGTATGGT 69 Query 61 AAGTCTCCAAAACTAACCACTAAACCATATGATCCTAAAGGCGAGTTCCCTTCTCATTTT 120 ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 70 AAGTCCCCAAACCTAACCACTAAACCATATGATCCTAAAGACGAGTCCCCTTCTCGCTTT 129 Query 121 AGCCAAAGTGCTTACAAATATGATGGTCCACAAATTTATACCGTAAGAGAGGCGACTAGT 180 | |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| Sbjct 130 ACCCAAAGTGCTTACAAATATGGTGGTCCAAAAATCTATACCGTAAGAGAGGCGACTAGT 189 Query 181 AC-TACTAGTTGTGGTCGAGCTATTTATACGTACTCACATGAGTCAACTATAAAAGAACC 239 || || ||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||| Sbjct 190 ACTTA-TAGTTATGGTCGAGCTATTTATATGTACGCACCTGAGTCAACTATAAAAGAACC 248 Query 240 TGTTCTTTCTCACCCCACAGAACATATTCAATACTTTGGTGGTACCCGTCCTTTTGTTGG 299 |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 249 TGTTGTTTCTCACCCCACAGAACATATTCAATACTATGGTGGTACCCGTCCTTTTGTTGC 308 Query 300 CAATCCCAACCGGTTTGAGACGCCAAAAGGACGAGTTATTAACTGTGACGAGGCGGTCCA 359 |||||||||| ||||||||| ||| |||||||| ||||||||||| || ||||||||||| Sbjct 309 CAATCCCAACAGGTTTGAGAGGCCGAAAGGACGGGTTATTAACTGCGATGAGGCGGTCCA 368 Query 360 ACTCTATGGAGGGGTGCTTATAAAGGAATTTCGT 393 |||||||||||||||||||||||||||||||||| Sbjct 369 ACTCTATGGAGGGGTGCTTATAAAGGAATTTCGT 402 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18548799381 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5