BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493293
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15920.1 | Symbols: SWEET17, AtSWEET17 | Nodulin MtN3 family... 1432 0.0
> AT4G15920.1 | Symbols: SWEET17, AtSWEET17 | Nodulin MtN3 family
protein | chr4:9030517-9033395 REVERSE LENGTH=1003
Length=1003
Score = 1432 bits (775), Expect = 0.0
Identities = 935/1006 (93%), Gaps = 35/1006 (3%)
Strand=Plus/Plus
Query 1 Gtctctctgtctctttctc--tctc-c-ctctcAGAAACTCATTCTCCAAAAATGGCAGA 56
||||||||||||||||||| |||| | ||||||||||||| |||||||| |||||||||
Sbjct 1 GTCTCTCTGTCTCTTTCTCTTTCTCTCTCTCTCAGAAACTCTTTCTCCAATAATGGCAGA 60
Query 57 GCCAAGTTTCTATATCGGAGTCATAGGAAATGTAATCTCTGTACT-CTTCTTCCTCTCAC 115
| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 61 GGCAAGTTTCTATATCGGAGTCATAGGAAATGTAATCTCCGTACTAGTT-TTCCTCTCAC 119
Query 116 CAGTGGAGACGTTTTGGAAAATAGTGAAGCGGAGATCGACGGAGGAGTACAAAAGCTTGC 175
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CAGTGGAGACGTTTTGGAAAATAGTGAAGCGGAGATCAACGGAGGAGTACAAAAGCTTGC 179
Query 176 CGTATATTTGCACGTTGTTGGGATCATCGCTATGGACATATTACGGCATCGTCACTCCCG 235
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTACATTTGCACGTTGTTAGGATCATCGCTATGGACATATTACGGCATCGTCACTCCCG 239
Query 236 GAGAATATCTTGTCTCCACCGTTAATGGCTTTGGTGCTATCGTTGAAACCATCTACGTTT 295
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 240 GAGAATATCTTGTCTCCACCGTTAATGGCTTTGGTGCTCTTGTTGAAACCATCTACGTTT 299
Query 296 CACTTTTTCTCTTTTATGCCCCTCGACATCTCAAGTTGAATACAGTGGTA-GTGGTTGCG 354
||||||||||||||||||||||||||||||||||| |||| ||||||| | |||| |||
Sbjct 300 CACTTTTTCTCTTTTATGCCCCTCGACATCTCAAGCTGAAAACAGTGG-ATGTGGAAGCG 358
Query 355 ATGTTGAACGTGTTTTTCCCAATCGCAGCGATTGTGGCGACGAGAAGTGCGTTTAAAGAT 414
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 359 ATGTTGAACGTGTTTTTTCCAATCGCGGCGATTGTGGCAACGAGAAGTGCGTTTGAAGAT 418
Query 415 GAGAAGATGCGTTCTCAATCGATAGGTTTCATATCTGCTGGTCTAAACATTATAATGTAT 474
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGAAGATGCGTTCTCAATCAATAGGTTTCATATCTGCTGGTCTAAACATTATAATGTAT 478
Query 475 GGTTCTCCTCTTTCTGCTATGAAAACAGTAGTGACGACAAAGAGCGTGAAATACATGCCG 534
|||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 479 GGTTCTCCACTTTCAGCAATGAAAACAGTAGTGACAACAAAGAGCGTGAAATACATGCCG 538
Query 535 TTTTGGTTGTCGTTCTTCCTCTTCTTAAACGGCGCGATTTGGGCTGTCTATGCTTTACTC 594
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTTGGTTGTCGTTTTTCCTCTTCTTAAACGGCGCGATTTGGGCTGTCTATGCTTTACTC 598
Query 595 CAACACGACGTTTTCTTACTCGTGCCAAATGGAGTGGGGTTTGTGTTTGGGACAATGCAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAACACGACGTTTTCTTACTCGTGCCAAATGGAGTGGGGTTTGTGTTTGGGACAATGCAA 658
Query 655 CTCATACTTTATGGAATTTACAGAAATGCCAAACCGGTTGGTTTAAGCAACGGTTTAAGT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCATACTTTATGGAATTTACAGAAATGCCAAACCGGTTGGTTTAAGCAACGGTTTAAGT 718
Query 715 GAGATTGCTCAAGATGAAGAGGAAGGCCTCACATCACGTGTTGTCCCTCTCCTCTCTTAA 774
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 GAGATTGCTCAAGATGAAGAGGAAGGCCTCACATCACGTGTTGAACCTCTCCTCTCTTAA 778
Query 775 ATCC----------At-t-------tt-tt--ttAATTTGGGTCTTATAAATTATAAATC 813
|||| || | || || |||||||||||||||||||| | |||||
Sbjct 779 ATCCCTTTTTTTTTATGTCAAGAGCTTGTTAATTAATTTGGGTCTTATAAAT-ACAAATC 837
Query 814 TTTATATTTTT-GTTCCATTATTGTGGTGTGCGATTTTGTGTACGTTATTTATTTG-ACA 871
||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 838 TTTATATTTTTTGTTACATTATTGTGGTGTGCGATTTTGTGTACGTTATTTTTTTGGACA 897
Query 872 AAATTAGCTTCATTTAAAGATGTTAC-T-TTTAAGGT-TTGTTATTGTAATGCATCTTTT 928
||||||| || |||| |||||||||| | ||| ||| ||||||||||||||||||||||
Sbjct 898 AAATTAGATTAATTTGAAGATGTTACATATTTTAGGGATTGTTATTGTAATGCATCTTTT 957
Query 929 GTTAAGCGAAGATTAGAGAATGAAGTGTTTACTATGTTTTGAGGCT 974
||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 958 GTTAAGCGAAGATAAGAGAATGGAGTGTTTACTATGTTTTGAGGCT 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5