BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493323
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15620.1 | Symbols: | Uncharacterised protein family (UPF04... 1026 0.0
AT4G15630.1 | Symbols: | Uncharacterised protein family (UPF04... 658 0.0
> AT4G15620.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:8913838-8915663 FORWARD LENGTH=802
Length=802
Score = 1026 bits (555), Expect = 0.0
Identities = 646/689 (94%), Gaps = 10/689 (1%)
Strand=Plus/Plus
Query 66 AATGAAACACGAGGGCAAGAACAATATGAATGGGATGGAGATGGAGAAAGGAAAGAGAGA 125
|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 97 AATGGAACACGAGGGCAAGAACAACATGAATGGTATGGAGATGGAGAAAGGAAAGAGAGA 156
Query 126 GAGTGGGTCGAGAAAAGGAGTTGAGTTAACGATGAGAGTGTTGGCTTTGGTCCTAACAAT 185
| |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 157 GCTTGGGTCAAGAAAAGGAGTTGAGTTAACTATGAGAGTGTTGGCTTTGATCCTAACAAT 216
Query 186 GGCGGCTGCAACAGTACTTGGTGTCGCAAAGCAAACAAAGGTTGTGTCTATTAAGCTTAT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GGCGGCTGCAACAGTACTTGGTGTCGCAAAGCAAACAAAGGTTGTGTCTATTAAGCTTAT 276
Query 246 TCCCGCTTTGCCTCCTCTTGATATCACTACAACCGCCAAAGCCTCTTACTTGTCGGCCTT 305
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 277 TCCCACTTTGCCTCCTCTTGATATCACTACTACCGCCAAAGCCTCTTACTTGTCGGCATT 336
Query 306 TGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACAGCGATCTCGATAGCGAT 365
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 337 TGTGTACAACATTTCTGTGAACGCTATAGCTTGCGGTTACACGGCGATCTCGATAGCGAT 396
Query 366 TCTGATGATCAGTAGGGGAAGAAGAAGCAAAAAGTTGTTAATGGCGGTTTTGCTAGGAGA 425
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 397 TCTGATGATCAGCAGGGGAAGAAGAAGCAAGAAGTTGTTAATGGTGGTTTTGCTAGGAGA 456
Query 426 TCTAGTAATGGTGGCTTTGCTGTTTTCAGGCACCGGAGCCGCCAGCGCAATTGGGCTAAT 485
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 457 TCTAGTGATGGTGGCTTTGCTGTTTTCCGGCACTGGAGCCGCCAGCGCAATTGGGCTAAT 516
Query 486 GGGTTTGCAAGGGAACAAGCATGTTATGTGGAATAAAGTTTGTGGCGTTTTTGGAAAATT 545
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 517 GGGTTTACATGGGAACAAGCATGTCATGTGGAAGAAAGTTTGTGGCGTTTTTGGAAAATT 576
Query 546 CTGTCACCGAGCTGCTCCTTCGCTTCCTCTCACTTTTCTTGCTGCAGTTGTGTTTATGTT 605
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 577 CTGTCACCGAGCTGCTCCTTCGCTTCCTCTCACTCTTCTTGCTGCAGTTGTGTTTATGTT 636
Query 606 TCTTGTTGTTCTTGATGCTATTAAGCTTCCCTAATT-T-ACtttttttCTGCTTCTTGTC 663
||||||||||||||| |||||||||||||| ||||| | | || ||| ||| ||||||||
Sbjct 637 TCTTGTTGTTCTTGACGCTATTAAGCTTCCTTAATTATTAATTGTTT-CTG-TTCTTGTC 694
Query 664 GTTTCGTGTGATGTAAAAATAAAATCATTATCAACAATCATGTAATTGTCTATTGCTTCT 723
|||| ||||||||||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 695 GTTTTGTGTGATGTAAAA-TAA---C-T-ATCAACAATCATGTAATTGTCTATTGCTTCT 748
Query 724 AATGTTTTAGCAAATCGTTTTCTATGGTG 752
||||||||| || ||||||||||||||||
Sbjct 749 AATGTTTTATCACATCGTTTTCTATGGTG 777
> AT4G15630.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:8917430-8918852 FORWARD LENGTH=839
Length=839
Score = 658 bits (356), Expect = 0.0
Identities = 512/586 (87%), Gaps = 15/586 (3%)
Strand=Plus/Plus
Query 66 AATGAAACACGAGGGCAAGAACAATATGAATGGGATGGAGATGGAGAAAGGAAAGAGAGA 125
|||| |||||||| |||||||||| || ||||||||||||||||||||||||| | |||
Sbjct 97 AATGGAACACGAGAGCAAGAACAAGGTGGATGGGATGGAGATGGAGAAAGGAAAAAAAGA 156
Query 126 GAGTGGGTCGAGAAAAGGAGTTGAGTTAACGATGAGAGTGTTGGCTTTGGTCCTAACAAT 185
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 157 GAGTGGGTCGAGAAAAGGACTTGAGTTAACGATGAGAGTTTTGGCTTTGGTCCTAACAAT 216
Query 186 GGCGGCTGCAACAGTACTTGGTGTCGC-AAAGCAAACAAAGGTTGTGTCTATTAAGCTTA 244
|| ||||| |||||||||||||| || ||| ||||||||||||||| |||| |||||||
Sbjct 217 GGTAGCTGCGACAGTACTTGGTGTTGCGAAA-CAAACAAAGGTTGTGCCTATAAAGCTTA 275
Query 245 TTCCCGCTTTGCCTCCTCTTGATATCACTACAACCGCCAAAGCCTCTTACTTGTCGGCCT 304
|||| |||| ||||||||| || || |||||||||||||||||||||||||||| || |
Sbjct 276 TTCCTACTTTACCTCCTCTTAATGTCTCTACAACCGCCAAAGCCTCTTACTTGTCTGCTT 335
Query 305 TTGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACAGCGATCTCGATAGCGA 364
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 336 TTGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACCGCGATCTCAATAGTGA 395
Query 365 TTCTGATGATCAGTAGGGG-AAGAAGAAGCAAAAAGTT-GTTAATGGCGGTTTTGCTAGG 422
|| |||||||||| | || || ||||||||||| ||| ||| |||||||| ||| ||||
Sbjct 396 TTGTGATGATCAGCAAAGGCAA-AAGAAGCAAAA-GTTTGTTGATGGCGGTCTTGATAGG 453
Query 423 AGATCT-AGTAATGGTGGCTTTGCTGTTTTC-AGGCACCGGAGCCGCCAGCGCAATTGGG 480
|||||| | | ||||||||||| |||||||| || ||| ||||||||| | ||||| |||
Sbjct 454 AGATCTTA-TGATGGTGGCTTTACTGTTTTCCAG-CACTGGAGCCGCCGGAGCAATCGGG 511
Query 481 CTAATGGGTTTGCAAGGGAACAAGCATGTTATGTGGAATAAAGTTTGTGGCGTTTTTGGA 540
||||||||| ||| |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 512 CTAATGGGTAGGCATGGGAACAAACATGTTATGTGGAAAAAAGTTTGTGGAGTGTTTGGC 571
Query 541 AAATTCTGTCACCGAGCTGCTCCTTC-GCTTCCTCTCACTTTTCTTGCTGCAGTTGTGTT 599
||||||||| ||| ||||||| ||| | || || ||||| || ||||| ||||||||||
Sbjct 572 AAATTCTGTAACCAAGCTGCTGTTTCTG-TTGCTATCACTCTTATTGCTTCAGTTGTGTT 630
Query 600 TATGTTTCTTGTTGTTCTTGATGCTATT-AAGCTTCCCTAAT-TTA 643
|||| |||||||||||||||||||| || || ||||| |||| |||
Sbjct 631 TATGCTTCTTGTTGTTCTTGATGCT-TTGAAACTTCCTTAATCTTA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5