BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493326 Length=2542 Score E Sequences producing significant alignments: (Bits) Value AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulo... 4032 0.0 AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate s... 601 1e-170 AT4G15510.1 | Symbols: | Photosystem II reaction center PsbP f... 165 2e-39 > AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8883907-8887565 FORWARD LENGTH=2776 Length=2776 Score = 4032 bits (2183), Expect = 0.0 Identities = 2430/2549 (95%), Gaps = 18/2549 (1%) Strand=Plus/Plus Query 1 AAATTTTATTCTCCATAAATCTTTATAT-TACTTACTTACATTCCCAAAGTTTTCAACTT 59 ||||||||||||| ||||||| |||||| | ||||||||||||| |||||||||||| | Sbjct 228 AAATTTTATTCTCTATAAATCCTTATATGT-TTTACTTACATTCCTAAAGTTTTCAAC-T 285 Query 60 TCTCTTCTGAGGTTCAAAAAGT---TGAAATGGCTTCATCTGCATTTGCTTTTCCTTCTT 116 | || | |||| |||||||||| | ||||||||| |||||||||||||||||||||| Sbjct 286 T-TC-T-TGAGCTTCAAAAAGTACCTCCAATGGCTTCTTCTGCATTTGCTTTTCCTTCTT 342 Query 117 ACATAATAACCAAAGGAGGAGTTTCAACAGATTCTTGTAAATCAACTTCTTTGTCTTCTT 176 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 343 ACATAATAACCAAAGGAGGACTTTCAACTGATTCTTGTAAATCAACTTCTTTGTCTTCTT 402 Query 177 CTCGATCTTTGGTTACAGATCTTTCATCGCCATGTCTCAGACCCAACAACAATTCCCATA 236 || |||||||||||||||||||| |||| |||||||| | ||||||||||||||||||| Sbjct 403 CTAGATCTTTGGTTACAGATCTTCCATCACCATGTCTGAAACCCAACAACAATTCCCATT 462 Query 237 CAAACAGAAGAGCAAAAGTGAATGCTTCACTTGCAGAGAAGGGTGAATATTATTCAAACA 296 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 463 CAAACAGAAGAGCAAAAGTGTGTGCTTCACTTGCAGAGAAGGGTGAATATTATTCAAACA 522 Query 297 GACCACCAACTCCATTACTTGACACTATTAACTATCCAATTCACATGAAAAATCTTTCTG 356 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 523 GACCACCAACTCCATTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTTTCTG 582 Query 357 TCAAGGAGCTGAAACAACTTTCTGATGAGCTGAGATCAGATGTGATCTTTAATGTGTCGA 416 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 583 TCAAGGAACTGAAACAACTTTCTGATGAGCTGAGATCAGACGTGATCTTTAATGTGTCGA 642 Query 417 AAACCGGTGGACATTTGGGGTCGAGTCTTGGTGTTGTGGAGCTTACTGTGGCT-TTGCAT 475 |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 643 AAACCGGTGGACATTTGGGGTCAAGTCTTGGTGTTGTGGAGCTTACTGTGGCTCTT-CAT 701 Query 476 TACATTTTCAATACTCCACAGGATAAGATTCTTTGGGATGTTGGTCATCAGTCTTATCCT 535 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 702 TACATTTTCAATACTCCACAAGACAAGATTCTTTGGGATGTTGGTCATCAGTCTTATCCT 761 Query 536 CACAAGATTCTTACTGGGAGAAGAGGAAAGATGCCTACAATGAGGCAAACCAATGGTCTC 595 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 CATAAGATTCTTACTGGGAGAAGAGGAAAGATGCCTACAATGAGGCAAACCAATGGTCTC 821 Query 596 TCGGGTTTCACGAAGCGAGGAGAGAGCGAACATGATTGCTTTGGTACCGGACACAGTTCA 655 || |||||||| || ||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 822 TCTGGTTTCACCAAACGAGGAGAGAGTGAACATGATTGCTTTGGTACTGGACACAGCTCA 881 Query 656 ACCACAATATCTGCTGGTTTAGGAATGGCGGTAGGACGGGATTTGAAGGGGAAGAACAAC 715 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 882 ACCACAATATCTGCTGGTTTAGGAATGGCGGTAGGAAGGGATTTGAAGGGGAAGAACAAC 941 Query 716 AATGTGGTTGCTGTGATTGGTGATGGTGCAATGACGGCAGGGCAGGCTTATGAAGCCATG 775 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 942 AATGTGGTTGCTGTGATTGGTGATGGTGCGATGACGGCAGGACAGGCTTATGAAGCCATG 1001 Query 776 AACAACGCTGGCTATCTTGACTCTGATATGATTGTGATTCTTAATGACAACAAGCAAGTC 835 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 AACAACGCCGGATATCTAGACTCTGATATGATTGTGATTCTTAATGACAACAAGCAAGTC 1061 Query 836 TCATTACCTACAGCTACTTTGGATGGACCAAGTCCACCTGTTGGAGCATTGAGCAGTGCT 895 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1062 TCATTACCTACAGCTACTTTGGATGGACCAAGTCCACCTGTTGGTGCATTGAGCAGTGCT 1121 Query 896 CTTAGTCGGTTACAGTCTAACCCGGCTCTCAGAGAGTTGAGAGAAGTCGCAAAGGGTATG 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 CTTAGTCGGTTACAGTCTAACCCGGCTCTCAGAGAGTTGAGAGAAGTCGCAAAGGGTATG 1181 Query 956 ACAAAGCAAATAGGTGGACCAATGCATCAGTTGGCTGCTAAGGTAGATGAGTATGCCCGA 1015 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1182 ACAAAGCAAATAGGCGGACCAATGCATCAGTTGGCGGCTAAGGTAGATGAGTATGCTCGA 1241 Query 1016 GGAATGATAAGCGGGACTGGATCGTCACTGTTTGAAGAACTTGGTCTTTACTATATTGGT 1075 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1242 GGAATGATAAGCGGGACTGGATCGTCACTGTTTGAAGAACTCGGTCTTTACTATATTGGT 1301 Query 1076 CCAGTTGATGGGCACAACATAGATGATTTGGTAGCCATTCTTAAAGAAGTTAAGAGTACT 1135 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 CCAGTTGATGGGCACAACATAGATGATTTGGTAGCCATTCTTAAAGAAGTTAAGAGTACC 1361 Query 1136 AGAACCACAGGACCGGTACTTATTCATGTGGTGACGGAGAAAGGTCGCGGTTACCCTTAC 1195 |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1362 AGAACCACAGGACCTGTACTTATTCATGTGGTGACGGAGAAAGGTCGTGGTTATCCTTAC 1421 Query 1196 GCGGAGAGAGCTGATGACAAATACCATGGTGTTGTGAAATTCGATCCAGCGACGGGTAAA 1255 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 1422 GCGGAGAGAGCTGATGACAAATACCATGGTGTTGTGAAATTTGATCCAGCAACGGGTAGA 1481 Query 1256 CAGTTCAAAAGTACTAATAAGACGCAATCTTACACTACTTACTTTGCGGAGGCATTAGTG 1315 |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1482 CAGTTCAAAACTACTAATAAGACTCAATCTTACACAACTTACTTTGCGGAGGCATTAGTC 1541 Query 1316 GCAGAAGCAGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGGACC 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1542 GCAGAAGCAGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGAACC 1601 Query 1376 GGGTTAAATCTCTTTCAACGTCGCTTCCCAACAAGATGTTTCGATGTCGGAATAGCGGAA 1435 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1602 GGGTTAAATCTCTTTCAACGTCGCTTCCCAACAAGATGTTTCGATGTAGGAATAGCGGAA 1661 Query 1436 CAACACGCAGTTACTTTTGCTGCGGGTTTAGCCTGTGAAGGCCTTAAGCCCTTCTGTGCA 1495 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1662 CAACACGCAGTTACTTTTGCTGCGGGTTTAGCCTGTGAAGGCCTTAAACCCTTCTGTGCA 1721 Query 1496 ATCTATTCATCCTTCATGCAGCGTGCTTATGACCAGGTTGTACATGATGTTGATTTGCAA 1555 |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1722 ATCTATTCGTCTTTCATGCAGCGTGCTTATGACCAGGTTGTCCATGATGTTGATTTGCAA 1781 Query 1556 AAATTACCAGTGAGATTTGCGATGGATAGAGCTGGACTTGTTGGAGCTGATGGTCCAACA 1615 |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 1782 AAATTACCGGTGAGATTTGCAATGGATAGAGCTGGACTCGTTGGAGCTGATGGTCCGACA 1841 Query 1616 CATTGTGGAGCTTTTGATGTGACATTTATGGCTTGTCTTCCTAACATGATTGTGATGGCT 1675 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1842 CATTGTGGAGCTTTCGATGTGACATTTATGGCTTGTCTTCCTAACATGATAGTGATGGCT 1901 Query 1676 CCATCAGATGAAGCAGATCTGTTTAACATGGTTGCAACCGCTGCTGCGATTGATGATCGT 1735 |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| Sbjct 1902 CCATCAGATGAAGCAGATCTCTTTAACATGGTTGCAACTGCTGTTGCGATTGATGATCGT 1961 Query 1736 CCTTCTTGTTTCCGTTACCCTAGAGGTAATGGTATTGGAGTTGCATTACCTCCCGGTAAC 1795 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1962 CCTTCTTGTTTCCGTTACCCTAGAGGTAACGGTATTGGAGTTGCATTACCTCCCGGAAAC 2021 Query 1796 AAAGGTGTTCCAATTGAGATTGGAAAAGGTAGGATTTTAAAGGAAGGAGAGAGGGTTGCG 1855 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 2022 AAAGGTGTTCCAATTGAGATTGGGAAAGGTAGAATTTTAAAGGAAGGAGAGAGAGTTGCG 2081 Query 1856 CTGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAGGAGCGGCTGTAATGCTTGAAGAA 1915 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2082 TTGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAGGAGCGGCTGTAATGCTCGAAGAA 2141 Query 1916 CGCGGATTAAACGTAACTGTAGCAGATGCACGATTTTGCAAGCCATTGGACCGTGCTCTC 1975 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 2142 CGCGGATTAAACGTAACTGTAGCGGATGCACGGTTTTGCAAGCCATTGGACCGTGCTCTC 2201 Query 1976 ATTCGCAGCTTAGCTAAGTCGCATGAGGTTCTGATCACGGTTGAAGAAGGTTCGATTGGA 2035 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2202 ATTCGCAGCTTAGCTAAGTCGCACGAGGTTCTGATCACGGTTGAAGAAGGTTCCATTGGA 2261 Query 2036 GGGTTTGGATCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTCGATGGCAAACTC 2095 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2262 GGTTTTGGCTCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTTGATGGCAAACTC 2321 Query 2096 AAGTGGAGACCAATGGTACTGCCTGATCGGTACATTGATCACGGTGCACCAGCTGATCAA 2155 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2322 AAGTGGAGACCAATGGTACTGCCTGATCGATACATTGATCACGGTGCACCAGCTGATCAA 2381 Query 2156 CTAGCTGAAGCTGGACTCATGCCATCTCACATCGCAGCAACCGCACTTAACTTAATCGGT 2215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2382 CTAGCTGAAGCTGGACTCATGCCATCTCACATCGCAGCAACCGCACTTAACTTAATCGGT 2441 Query 2216 GCACCAAGGGAAGCTCTGTTTTGAGAACAAGAATCGGTTGGCTAAAACATATATATACAA 2275 |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| Sbjct 2442 GCACCAAGGGAAGCTCTGTTTTGAGAGTAAGAATCTGTTGGCTAAAACATATGTATACAA 2501 Query 2276 ACACTCTAAATGCAACCCAAGGTTTCTTCTAAGTACTTGATGAAAATTCCCGCCGAAAAG 2335 ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||| Sbjct 2502 ACACTCTAAATGCAACCCAAGGTTTCTTCTAAGTACT-GATCAGAATTCCCGCCGAGAAG 2560 Query 2336 TCCTTTGGCAACAGCTATATAT-TT-ACTAAGATGGTGAAGAGAAAGGCAAAGGCAAAGG 2393 |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| Sbjct 2561 TCCTTTGGCAACAGCTATATATATTTACTAAGATTGTGAAGAGAAAGGCAAAGGCAAAGG 2620 Query 2394 TTGTGCAAAGATTAGTATTATGGTAAAACTGGTATTTGTTTTGTAATTTTTGGTTAGGGG 2453 |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| Sbjct 2621 TTGTGCAAAGATTAGTATTATGATAAAACTGGTATTTGTTTTGTAATTTT-GTTTAGGAT 2679 Query 2454 TGTGATGGAGATCGAGTTGTACAATAATCATCTAACATCTTGTAAAAATAAATTACATTT 2513 |||||||||||||| |||||||||||||| | |||||||||||||||| |||||||| | Sbjct 2680 TGTGATGGAGATCGTGTTGTACAATAATC-T--AACATCTTGTAAAAATCAATTACATCT 2736 Query 2514 CTTTGTGTATCTTTCATACCATTGTGTGA 2542 |||||||||||||||||| | |||||||| Sbjct 2737 CTTTGTGTATCTTTCATAGCTTTGTGTGA 2765 > AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate synthase 1 | chr3:7573634-7576623 REVERSE LENGTH=2228 Length=2228 Score = 601 bits (325), Expect = 1e-170 Identities = 547/654 (84%), Gaps = 16/654 (2%) Strand=Plus/Plus Query 270 CAGAGAAGGGTGAATATTATTCAAACAGACCACCAACTCCATTACTT-GACACTATTAAC 328 ||||||| |||||||||||||||||||||||||||||||| ||| || ||||| || ||| Sbjct 184 CAGAGAAAGGTGAATATTATTCAAACAGACCACCAACTCCTTTA-TTGGACACAATCAAC 242 Query 329 TATCCAATTCACATGAAAAATCTTTCTGTCAAGGAGCTGAAACAACTTTCTGATGAGCTG 388 ||||||| |||||||||||||| || |||| || || ||| ||||| || ||| || Sbjct 243 CATCCAATGCACATGAAAAATCTCTCCATCAAAGAACTCAAAGTTCTTTCGGACGAGTTG 302 Query 389 AGATCAGATGTGATCTTTAATGTGTCGAAAACCGGTGGACATTTGGGGTCGAGTCTTGGT 448 ||||| ||||| || |||||||| |||||||| || ||||| ||||| |||| ||||||| Sbjct 303 AGATCTGATGTTATTTTTAATGTTTCGAAAACTGGAGGACACTTGGGTTCGAATCTTGGT 362 Query 449 GTTGTGGAGCTTACTGTGG-CTTTGCATTACATTTTCAATACTCCACAGGATAAGATTCT 507 ||||| ||||| || |||| | || |||||||| ||||||||||| || |||||||| || Sbjct 363 GTTGTTGAGCTCACCGTGGCCCTT-CATTACATCTTCAATACTCCTCATGATAAGATCCT 421 Query 508 TTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTTACTGGGA-GAAGAGGAAAGA 566 ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct 422 TTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTAAC-GGGAAGAAGAGGAAAGA 480 Query 567 TGCCTACAATGAGGCAAACCAATGGTCTCTCGGGTTTCACGAAGCGAGGAGAGAGCGAAC 626 || ||||| ||||| |||||||| ||||| || | ||| |||||| ||||||| || | Sbjct 481 TGAAGACAATAAGGCAGACCAATGGCCTCTCCGGCTACACCAAGCGAAGAGAGAGTGAGC 540 Query 627 ATGATTGCTTT-GGTACCGGACACAGTTCAACCACAATATCTGCTGGTTTAGGAATGGCG 685 |||| | |||| || ||||| |||||||| |||||| ||||||| || ||||| ||||| Sbjct 541 ATGACT-CTTTTGGCACCGGGCACAGTTCGACCACACTATCTGCAGGCTTAGGGATGGCT 599 Query 686 GTAGG-ACGGGATTTGAAGGGGAAGAACAACAATGTGGTTGCTGTGATTGGTGATGGTGC 744 ||||| | ||||||||||||||| |||||||| |||||| | || || || |||||||| Sbjct 600 GTAGGGA-GGGATTTGAAGGGGATGAACAACAGCGTGGTTTCGGTTATAGGCGATGGTGC 658 Query 745 AATGACGGCAGGGCAGGCTTATGAAGCCATGAACAACGCTGGCTATCTTG-ACTCTGATA 803 ||||| || || || ||||||||||| |||||||| |||||||| ||| |||| | | Sbjct 659 TATGACAGCTGGACAAGCTTATGAAGCAATGAACAATGCTGGCTA-CTTACACTCCAACA 717 Query 804 TGATTGTGATTCTTAATGACAACAAGCAAGTCTCATTACCTACAGCTA-CTTTGGATGGA 862 ||||||||||||| || |||||||| ||||| || || ||||| |||| ||| ||||||| Sbjct 718 TGATTGTGATTCTCAACGACAACAAACAAGTATCTTTGCCTACTGCTAACTT-GGATGGA 776 Query 863 CCAAGTCCACCTGTTGGAGCAT-TGAGCAGTGCTCTTAGTCGGTTACAGTCTAA 915 |||| || |||||||||||| | ||||| ||||||||||| || | || ||||| Sbjct 777 CCAACTCAACCTGTTGGAGC-TCTGAGCTGTGCTCTTAGTAGGCTGCAATCTAA 829 > AT4G15510.1 | Symbols: | Photosystem II reaction center PsbP family protein | chr4:8860616-8862665 FORWARD LENGTH=1085 Length=1085 Score = 165 bits (89), Expect = 2e-39 Identities = 155/183 (85%), Gaps = 19/183 (10%) Strand=Plus/Plus Query 27 ATTACTTACTTACATTCCCAAAGTTTTCAACTTTCTCTTCTGAGGTTCAAAAAGT----T 82 ||||| | |||||| | |||||| |||||| || | ||||||| |||||||| | | Sbjct 32 ATTAC-T-CTTACAGT-CCAAAG-TTTCAA--TT-T-TTCTGAGCTTCAAAAA-TCCACT 82 Query 83 GAAATGGCTTCATCTGCATTTGCTTTTCCTTCTTACATAATAACCAAAGGAGGAGTTTCA 142 ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||| Sbjct 83 CTAATGGCTTCATCTGCATTTGCGTTTCCTTCTTACATAATAACC-AA--AGGAGCCTCA 139 Query 143 ACAGATTCTTGT-AAATCAACTTCTTTGTCTTCTTCTCGATCTTTGGTTACAGATCTTTC 201 |||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 140 ACAGATTCTT-TCAAATCAACTTCTCTGTCTTCTTCTCGATCTTTGGTTACAGAT-TTCC 197 Query 202 ATC 204 ||| Sbjct 198 ATC 200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 126169861645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5