BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493370 Length=1886 Score E Sequences producing significant alignments: (Bits) Value AT4G15210.1 | Symbols: ATBETA-AMY, AT-BETA-AMY, RAM1, BMY1, BAM... 2706 0.0 > AT4G15210.1 | Symbols: ATBETA-AMY, AT-BETA-AMY, RAM1, BMY1, BAM5 | beta-amylase 5 | chr4:8666338-8669470 REVERSE LENGTH=2006 Length=2006 Score = 2706 bits (1465), Expect = 0.0 Identities = 1780/1925 (92%), Gaps = 50/1925 (3%) Strand=Plus/Plus Query 1 AGACATGTGAGCTTCAACTACTACTACTTATTGCTTATATTTTCCTACAACA----CT-- 54 |||||||||||||||| |||||||| | |||||||||||||||||||||||| || Sbjct 2 AGACATGTGAGCTTCATCTACTACT-CATATTGCTTATATTTTCCTACAACACTCTCTCA 60 Query 55 -C---aaaa-aaaaaaaaaCCA-GTTCTTTCTTTGTTTGTATTTAGAAG-AAAATGGCTG 107 | |||| ||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct 61 ACAAAAAAACAAAAAAAAAAGACGTTCTTTCTTTGTTTGTATTTAGAAGAAAAATGGCTA 120 Query 108 CCAATTACAACGAAAAGCTTCTTCTTAACTATGTTCCCGTTTACGTTATGCTTCCGCTGG 167 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 121 CCAATTACAACGAGAAGCTTCTTCTTAATTATGTTCCCGTTTACGTTATGCTTCCGTTGG 180 Query 168 GAGTTGTGAATGTGGAAAACGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTCAAGC 227 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | Sbjct 181 GAGTTGTGAATGTGGAAAATGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTTAAAC 240 Query 228 GTCTCAAAGAAGAAGCTGGCGTCGACGGCGTGATGGTCGATGTTTGGTGGGGAATCATAG 287 |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct 241 GTCTCAAAGAAGAAGCTGGCGTTGATGGCGTTATGGTCGATGTTTGGTGGGGAATCATAG 300 Query 288 AATCCAAAGGTCCCAAACAATACGATTGGACCGCCTACAAAACGCTATTCCAGTTAATCG 347 |||||||||||||||||||||| |||||||| |||||||||||||| |||||| | |||| Sbjct 301 AATCCAAAGGTCCCAAACAATATGATTGGACGGCCTACAAAACGCTGTTCCAGCTGATCG 360 Query 348 CGCGTTTAGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGCGGGAACGTCG 407 | ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 361 CACGTTTGGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGTGGAAACGTTG 420 Query 408 GCGACATCGTTACTATCCCGATCCCACAATGGGTGCGCGATGTCGGCGACAACGATCCCG 467 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 421 GCGACATCGTTACTATCCCGATCCCACAATGGGTTCGCGATGTCGGTGACAATGATCCCG 480 Query 468 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCCATCGGTGTTG 527 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 481 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCAATCGGTGTTG 540 Query 528 ATAACCTTCCCCTCTTCGCCGGAAGAACCGCGGTTCAGATATACAGTGATTACATGAGTA 587 |||| |||||||| || |||||||||||||| |||||| | ||||||||||||||||||| Sbjct 541 ATAATCTTCCCCTATTTGCCGGAAGAACCGCTGTTCAGTTGTACAGTGATTACATGAGTA 600 Query 588 GCTTCAAAGAAAACATGACGGATTTGATAGAAGCCGGCGCGATTGTTGACATTGAAGTCG 647 ||||||||||||||||| |||||||||||||||| || | |||||||||||| ||||||| Sbjct 601 GCTTCAAAGAAAACATGGCGGATTTGATAGAAGCTGGGGTGATTGTTGACATCGAAGTCG 660 Query 648 GACTTGGTCCC-GCCGGTGAACTTCGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTA 706 ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 661 GACTTGG-CCCGGCCGGTGAACTACGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTG 719 Query 707 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 779 Query 767 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGATTTGCCGGAGGACGCCGGAGAATACAAT 826 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 780 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGACTTGCCAGAGGACGCCGGAGAATACAAT 839 Query 827 GACAAGCCGGAGGAGACTGGATTTTTCAAGA-GAAATGGGACTTATGTCTCGGAGGAGGG 885 ||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||| Sbjct 840 GACAAGCCGGAGGAGACTGGATTTTTCAAGAAGGA-TGGGACTTATGTCTCGGAGAAGGG 898 Query 886 GAAGTTTTTCTTGACATGGTACTCGAACAAACTCATCTTTCATGGAGATCAGATCATAGG 945 |||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 899 GAAGTTTTTCATGACATGGTACTCGAACAAACTAATTTTTCATGGAGATCAGATCTTAGG 958 Query 946 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCGGGGAT 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 959 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCTGGGAT 1018 Query 1006 TCACTGGTTGTACAACCACCACAGCCACGCGGCGGAGCTGACTGCTGGATATTATAACCT 1065 |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct 1019 TCACTGGTTGTACAACCACCACAGCCACGCTGCGGAGTTGACTGCTGGATATTACAACCT 1078 Query 1066 CTTCAAGAGAGATGGTTACCGTCCTATCGCTCGGATGCTCTCAAAACACTACGGCATTCT 1125 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1079 TTTCAAGAGAGATGGTTACCGTCCGATCGCCCGGATGCTCTCAAAACACTACGGCATTCT 1138 Query 1126 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACCGCTGAAGCCCTAAGTGCTCC 1185 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1139 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACAGCTGAAGCCCTAAGTGCTCC 1198 Query 1186 CCAAGAACTTGTTCAAGTGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1245 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TCAAGAACTTGTTCAAGAGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1258 Query 1246 TGAGAATGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAAATTCTTCTTAACGCGAG 1305 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1259 TGAGAACGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAGATTCTTCTTAACGCGAG 1318 Query 1306 GCCTAACGGGGTTAACCCGAATGGTAAACCGAAGCTTAGAATGTACGGATTTACTTACCT 1365 |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 1319 GCCTAACGGGGTTAACCCAAACGGTAAGCCGAAGCTTAGAATGTACGGATTTACTTACCT 1378 Query 1366 TCGGTTATCTGATACGGTCTTTCAAGAAGACAACTTTAAGCTGTTCAAGAAGTTGGTGAG 1425 ||||||||| ||||| |||||||||||| |||||||| ||||||| |||||||||||||| Sbjct 1379 TCGGTTATCCGATACTGTCTTTCAAGAAAACAACTTTGAGCTGTTTAAGAAGTTGGTGAG 1438 Query 1426 GAAAATGCATGCTGATCAAGATAATTACTGTGGAGACGCAGCGAAGTACGGGCATGAGAT 1485 ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1439 GAAAATGCACGCTGATCAAGATTATT---GTGGAGACGCAGCGAAGTACGGGCATGAGAT 1495 Query 1486 TGTGCCGCTGAAAACGCCGAATTCGCAGCTGACGGTGGAGGATATCGCCGACGCGGCTCA 1545 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1496 TGTGCCGTTGAAAACGTCGAATTCGCAGCTGACGCTGGAGGATATCGCCGACGCGGCTCA 1555 Query 1546 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGACATGAAGGTCGACGGTT-GATTAT 1604 |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| Sbjct 1556 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGATTTGAAGGTCGACGGTTAG-TTAT 1614 Query 1605 ATTT-ATATGATTGATCGTCTAATCACaaagaaagtaagagaaggaaac--gt--g-a-g 1657 |||| ||||||| |||||||||||||||||||||||||| ||| ||| | | | | | Sbjct 1615 ATTTTATATGATCGATCGTCTAATCACAAAGAAAGTAAGGGAAAGAATCAAGGAAGTAAG 1674 Query 1658 aataagaagagaataaataaagagaataagaagagGTATTTACAACTTTAAGGGGTTAAA 1717 |||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||| Sbjct 1675 AATAAGAAGATAATAAATAAAGAGAATAAGAAGAGGCATTTGCAACTTTAAGAGGTTAAA 1734 Query 1718 ATTTCGTAAATGT-T-TG-GTT--GT-GTGT-TTT-GGGT-TACCAGAAGAAATAAAACG 1768 ||||| |||||| | || ||| || |||| ||| |||| ||||| ||||||||||||| Sbjct 1735 ATTTCTTAAATGAGTCTGAGTTTCGTTGTGTGTTTTGGGTGTACCATAAGAAATAAAACG 1794 Query 1769 T--GT--TTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAATTATG-G-CTGTGTA 1822 | | ||||||||||||||||||||||||||||||||||||||| || | ||| ||| Sbjct 1795 TACGGGGTTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAAT-ATTAGTCTGCGTA 1853 Query 1823 ATaaaaaaaaGT-TGTTTGTGTaaaaaaaTAAATAAGTGTTGTCAGTAAAATAATGCATC 1881 |||||||||||| ||| | ||||||| ||||||| ||||| ||||||||||||||||| Sbjct 1854 ATAAAAAAAAGTATGTGTA-GTAAAAA--TAAATAACTGTTGCCAGTAAAATAATGCATC 1910 Query 1882 ATTGT 1886 ||||| Sbjct 1911 ATTGT 1915 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93373013700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5