BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493377
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15110.1 | Symbols: CYP97B3 | cytochrome P450, family 97, su... 2870 0.0
> AT4G15110.1 | Symbols: CYP97B3 | cytochrome P450, family 97,
subfamily B, polypeptide 3 | chr4:8629773-8633055 REVERSE LENGTH=1954
Length=1954
Score = 2870 bits (1554), Expect = 0.0
Identities = 1785/1892 (94%), Gaps = 34/1892 (2%)
Strand=Plus/Plus
Query 1 TCTTTTTTCATTTGAAGATGGTTGCAGCAACCATGGCTTTTCCTTCCGCTGCTACTTATT 60
||| ||||||||||||||||| | |||| |||||||||||||| ||||||||||||||
Sbjct 46 TCTCTTTTCATTTGAAGATGG-T--AGCAGCCATGGCTTTTCCTGCCGCTGCTACTTATC 102
Query 61 CCACCCATTTCCATGGCGGCGGTCTTCATC-------G--CGATCACTGCCTCTTGGGCT 111
||||||||||||| ||||||| |||||||| | |||||| |||||||| ||
Sbjct 103 CCACCCATTTCCAAGGCGGCGCTCTTCATCTGGGTAGGACCGATCATTGCCTCTTCGG-- 160
Query 112 TCTTCTACCCACAAACCCTTT--TC-------TCTCGGAGATCTTCTGTTTCCATCAAGT 162
| |||||||| |||||| ||| || ||||||||| ||||||||||||||||||
Sbjct 161 T-TTCTACCCTCAAACCATTTCCTCTGTGAATTCTCGGAGAGCTTCTGTTTCCATCAAGT 219
Query 163 GCCAATCTATGGAGCCAAAGACGAGTGGTAACATATTGGACAATGCAAGCAACCTTTTAA 222
||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 220 GCCAATCTACGGAGCCAAAGACGAATGGTAACATATTGGACAATGCGAGCAACCTTTTGA 279
Query 223 CGAATTTTTTAAGTGGTGGAAGTTTGGGGTCAATGCCTACTGCTGAAGGCGCTGTCTCTG 282
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 280 CAAATTTTTTAAGTGGTGGAAGTTTGGGGTCAATGCCTACTGCTGAAGGCTCTGTCTCTG 339
Query 283 ATTTGTTTGGAAAGCCTCTCTTTTTATCTCTTTACGACTGGTTCTTGGAGCATGGAGGAG 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 ATTTGTTTGGAAAGCCTCTCTTTTTATCTCTTTACGACTGGTTCTTGGAGCATGGAGGAA 399
Query 343 TGTATAAACTTGCGTTTGGTCCAAAAGCCTTTGTTGTCATCTCAGATCCCATTGTTGCAA 402
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 400 TTTATAAACTTGCGTTTGGTCCAAAAGCCTTTGTTGTCATCTCAGATCCCATTATTGCAA 459
Query 403 GGCATGTCCTTCGGGAAAACGCGTTTTCTTATGACAAGGGAGTTCTTGCTGAGATCTTAG 462
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 460 GGCATGTCCTCCGGGAAAATGCTTTTTCTTATGACAAGGGAGTTCTTGCTGAGATCTTAG 519
Query 463 AGCCTATTATGGGAAAAGGGTTAATACCGGCTGACCTTGATACCTGGAAGTTAAGAAGAA 522
|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 520 AGCCGATTATGGGAAAAGGGTTAATACCGGCTGATCTAGATACGTGGAAGTTAAGAAGAA 579
Query 523 GAGCTATCACTCCCGCATTTCATAAATTGTATCTAGAGGCCATGGTCAAAGTATTTAGTG 582
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GAGCTATCACTCCCGCATTCCATAAATTGTATCTAGAGGCCATGGTCAAAGTATTTAGTG 639
Query 583 ACTGTTCGGAGAAAATGATTTTGAAATCTGAGAAACTCTTAAGGGAGAAAGAAACTTCAA 642
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 640 ACTGTTCGGAGAAAATGATATTGAAATCTGAGAAACTCATAAGGGAGAAAGAAACTTCAA 699
Query 643 GCGGGGAGGACACCATTGAGTTGGATCTGGAAGCAGAATTCTCGAGTCTAGCTCTTGATA 702
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 700 GCGGGGAGGACACCATTGAGTTGGATCTGGAAGCAGAATTCTCGAGTCTGGCTCTTGATA 759
Query 703 TTATAGGTCTTAGCGTGTTCAACTACGACTTTGGCTCTGTCACAAAGGAGTCCCCTGTGA 762
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 760 TTATAGGTCTTAGCGTGTTCAACTACGATTTTGGCTCTGTCACAAAAGAGTCCCCTGTGA 819
Query 763 TCAAGGCAGTTTATGGAACTCTTTTCGAGGCAGAGCATCGGTCTACTTTCTACTTCCCTT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TCAAGGCAGTTTATGGAACTCTTTTCGAGGCAGAGCATCGGTCTACTTTCTACTTCCCTT 879
Query 823 ATTGGAAATTTCCTCCAGCCAGATGGATAGTTCCGAGGCAACGAAAGTTCCAAAGCGATC 882
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 880 ATTGGAACTTTCCTCCAGCTAGATGGATAGTTCCGAGGCAACGAAAGTTCCAAAGCGATC 939
Query 883 TGAAGATTATAAACGACTGCCTTGATGGCCTCATTCAAAATGCTAAAGAGACAAGACAGG 942
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TGAAGATTATAAACGATTGCCTTGATGGCCTCATTCAAAATGCTAAAGAGACAAGACAGG 999
Query 943 AAACAGATGTGGAGAAGCTCCAGCAAAGGGACTACACTAATCTCAAGGATGCAAGTCTTT 1002
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1000 AAACAGATGTTGAGAAGCTCCAGGAAAGGGACTACACTAATCTCAAGGATGCAAGTCTTT 1059
Query 1003 TGCGGTTCTTAGTCGATATGCGTGGTGTTGATATTGATGACCGGCAGCTGAGGGATGACT 1062
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1060 TGCGGTTCTTAGTCGATATGCGCGGTGTTGACATTGATGACCGGCAGCTGAGGGATGACT 1119
Query 1063 TGATGACTATGCTAATTGCTGGTCATGAGACAACAGCAGCAGTTCTTACTTGGGCTGTTT 1122
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1120 TGATGACTATGCTAATTGCTGGTCATGAGACAACAGCAGCAGTACTTACTTGGGCTGTTT 1179
Query 1123 TCCTTTTGTCACAAAATCCTGAAAAAATTAGGAAAGCTCAAGCTGAGATTGATGCTGTGC 1182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TCCTTCTGTCACAAAATCCTGAAAAAATTAGGAAAGCTCAAGCTGAGATTGATGCTGTGC 1239
Query 1183 TTGGTCACGGTCCACCCACTTATGAATCAATGAAAAACCTCGAGTACATACGACTGATCG 1242
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1240 TTGGTCAAGGTCCACCCACTTATGAATCAATGAAAAAGCTCGAGTACATACGACTGATCG 1299
Query 1243 TTGTAGAAGTCCTTCGTCTCTATCCTCAGCCACCTTTGCTCATCAGACGCACTCTCAAAC 1302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TTGTAGAAGTCCTTCGTCTCTTTCCTCAGCCACCTTTGCTCATCAGACGCACTCTCAAAC 1359
Query 1303 CAGAAACCTTACCCGGGGGATACAAAGGTGAAAAAGAAGGTCATAAAGTCCCAAAAGGGA 1362
||||||| |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1360 CAGAAACATTACCCGGAGGACACAAAGGGGAAAAAGAAGGTCATAAAGTTCCAAAAGGGA 1419
Query 1363 CTGATATCTTTATTTCTGTGTATAATCTCCATAGATCTCCATACTTTTGGGATAATCCCC 1422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CTGATATCTTCATTTCTGTGTATAATCTCCATAGATCTCCATACTTTTGGGATAATCCCC 1479
Query 1423 ACGATTTTGAGCCGGAGAGGTTTTTAAGAACAAAGGAGAGCAATGGAATCGAAGGATGGG 1482
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1480 ACGATTTTGAGCCTGAGAGGTTTTTAAGAACAAAGGAGAGCAATGGAATTGAAGGATGGG 1539
Query 1483 CTGGCTTTGATCCATCTCGTAGCCTTGGGGCACTATATCCTAATGAGATCATATCAGACT 1542
|||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||
Sbjct 1540 CTGGCTTTGATCCATCTCGTAGCCCCGGGGCACTATATCCGAATGAGATAATAGCAGACT 1599
Query 1543 TTGCGTTCTTACCATTTGGTGGAGGGCCAAGAAAATGCGTTGGAGACCAGTTTGCCCTAA 1602
|||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 1600 TTGCATTCTTACCATTTGGTGGAGGACCAAGAAAATGCATTGGAGACCAGTTTGCACTAA 1659
Query 1603 TGGAATCAACCGTCGCACTAGCTATGCTGTTACAGAAATTCGATGTGGAGCTGCGTGGAT 1662
||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1660 TGGAATCGACCGTCGCACTAGCTATGTTGTTTCAGAAATTCGATGTGGAGCTGCGTGGAA 1719
Query 1663 CGCCGGAATCCGTTGAACTCGTGAGCGGCGCAACGATTCATGCCAAAAATGGGATGTGGT 1722
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 CGCCAGAATCTGTTGAACTCGTGAGCGGCGCAACGATTCATGCCAAAAATGGGATGTGGT 1779
Query 1723 GCAAACTAAAGAGAAGATCAAAGTGAAAATCTAAGGAGAGGCAAAAAGACTCAATTTTAA 1782
|||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||
Sbjct 1780 GCAAACTAAAGAGAAGATCAAAGTGAAATT-TATGGATAGGCAAAAAGACTCAATTTTAA 1838
Query 1783 CTTGAAGGAAGCTCTGAGTGTAAATGAGAAAGGA-ATTGCTTATGATTCACTAAACTTGC 1841
||||||||||||| |||||||||||||| | || || |||||||||||||||||| |
Sbjct 1839 CTTGAAGGAAGCT--GAGTGTAAATGAGAGATGATAT-GCTTATGATTCACTAAAC--G- 1892
Query 1842 TTACATTTCTTGAGATTTTGAAAATGCAAAAA 1873
| ||||| ||||||||||||||||||||||||
Sbjct 1893 T-ACATT-CTTGAGATTTTGAAAATGCAAAAA 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92770607160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5