BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493490 Length=2082 Score E Sequences producing significant alignments: (Bits) Value AT4G14210.1 | Symbols: PDS3, PDS, PDE226 | phytoene desaturase ... 3229 0.0 > AT4G14210.1 | Symbols: PDS3, PDS, PDE226 | phytoene desaturase 3 | chr4:8190212-8195265 REVERSE LENGTH=2213 Length=2213 Score = 3229 bits (1748), Expect = 0.0 Identities = 1994/2107 (95%), Gaps = 40/2107 (2%) Strand=Plus/Plus Query 1 ACATATTTCGTAAGCAACAAAAGAGCTTGGTCTGAAAACCAACCAAGACCATATGATGGG 60 |||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 116 ACATGTTTCGTAAGCAACAAAAGAGCTTGGTCTGAAAACCAAACAAGACC--AT-ATGGG 172 Query 61 CACTCAAAGCCTCCATTTTGTTATCGGCTACTTCCACTAGCTTCCTTCTTCTCTGCGTCT 120 ||||| || ||||||||||||||||||||||||||||||| |||| |||| ||||| | Sbjct 173 CACTCGAATACTCCATTTTGTTATCGGCTACTTCCACTAGCCTCCTCCTTCGCTGCG--T 230 Query 121 CCTCCTGGTTCTCTACTTTACGATTGCTCACTAGATTCATTGAAGCAGTTGTGACTTAAG 180 |||||| |||||||||| |||||| ||| |||||||||||||||||||||||| ||||| Sbjct 231 -CTCCTGTTTCTCTACTTCACGATTACTCGCTAGATTCATTGAAGCAGTTGTGAGTTAAG 289 Query 181 GTGGAG-AAATGGTTGTGTTTGGGAATGTTTCTGCGGCGAATTTGCCTTATCAAAACGGG 239 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 TTGGAGAAAATGGTTGTGTTTGGGAATGTTTCTGCGGCGAATTTGCCTTATCAAAACGGG 349 Query 240 TTTTTGGAGGCACTTTCTTCATCTGGAGGTAT-TGAATTGATGGGACACAGCTTTAGGGT 298 ||||||||||||| | ||||||||||||| | |||| | |||||||| ||||||||||| Sbjct 350 TTTTTGGAGGCAC--T-TTCATCTGGAGGT-TGTGAACTAATGGGACATAGCTTTAGGGT 405 Query 299 TCCGACTTTTCAAGCACTTAAGACAAGAACAAGGAGGAGAAGTAGTGCTGGTCCTTTGCA 358 ||| |||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 406 TCCCACTTCTCAAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCA 465 Query 359 GGTGGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAATACTGTCAATTTCTTGGAAGC 418 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 466 GGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCTTGGAAGC 525 Query 419 TGCTAGTTTATCTGCATCTTTCCGTAGTGCTCCTCGTCCTGCAAAGCCTTTAAAAGTTGT 478 |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 526 TGCTAGTTTATCTGCATCCTTCCGTAGTGCTCCTCGTCCTGCTAAGCCTTTGAAAGTTGT 585 Query 479 AATTGCTGGTGCTGGATTGGCTGGATTGTCAACTGCAAAGTACCTGGCTGATGCAGGCCA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 AATTGCTGGTGCTGGATTGGCTGGATTGTCAACTGCAAAGTACCTGGCTGATGCAGGCCA 645 Query 539 CAAACCTCTGTTACTTGAAGCAAGAGATGTTCTTGGTGGAAAGATAGCTGCATGGAAGGA 598 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 CAAACCTCTGTTGCTTGAAGCAAGAGATGTTCTTGGTGGAAAGATAGCTGCATGGAAGGA 705 Query 599 TGAAGATGGGGACTGGTATGAAACTGGTTTACATATATTCTTCGGTGCTTATCCAAATGT 658 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 706 TGAAGATGGGGACTGGTATGAGACTGGTTTACATATTTTCTTCGGTGCTTATCCGAATGT 765 Query 659 GCAGAACTTATTTGGAGAACTTGGGATCAATGATCGGTTGCAGTGGAAGGAACACTCCAT 718 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 GCAGAATTTATTTGGAGAACTTGGGATCAATGATCGGTTGCAGTGGAAGGAACACTCCAT 825 Query 719 GATTTTCGCTATGCCAAGTAAACCTGGAGAGTTTAGTAGATTTGACTTCCCAGATGTCCT 778 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 826 GATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCT 885 Query 779 ACCAGCACCCTTAAACGGTATTTGGGCTATTTTGCGGAACAACGAGATGCTGACATGGCC 838 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 ACCAGCACCCTTAAATGGTATTTGGGCTATTTTGCGGAACAACGAGATGCTGACATGGCC 945 Query 839 AGAGAAAATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGCCAGGCTTATGT 898 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 946 AGAGAAAATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGTCAGGCTTATGT 1005 Query 899 TGAAGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGGGAGTACCTGAGCG 958 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 TGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGGGAGTACCTGAGCG 1065 Query 959 TGTGACTGACGAGGTGTTTATTGCCATGTCAAAGGCGCTAAACTTTATCAACCCTGATGA 1018 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1066 CGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCGCTAAACTTTATAAACCCTGATGA 1125 Query 1019 ACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGGAAAAACATGGTTC 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1126 ACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGGAAAAACATGGTTC 1185 Query 1079 CAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAATAGTGGATCA 1138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1186 CAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAGTAGTGGATCA 1245 Query 1139 TATTCGATCACTAGGTGGGGAAGTGCAACTTAATTCTAGGATAAAGAAAATTGAGCTCAA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 TATTCGATCACTAGGTGGGGAAGTGCAACTTAATTCTAGGATAAAGAAAATTGAGCTCAA 1305 Query 1199 TAACGATGGCACGGTTAAGAGTTTCTTACTAACTAACGGAAGCACTGTCGAAGGAGACGC 1258 | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1306 TGACGATGGCACGGTTAAGAGTTTCTTACTCACTAATGGAAGCACTGTCGAAGGAGACGC 1365 Query 1259 TTATGTGTTTGCCGCTCCAGTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGA 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1366 TTATGTGTTTGCCGCTCCAGTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGA 1425 Query 1319 AATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTGCCAGTTATTAATGTTCATAT 1378 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1426 AATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATAT 1485 Query 1379 ATGGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAGAAGTAACCT 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1486 ATGGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAGAAGTAACCT 1545 Query 1439 TCTTAGCGTGTATGCCGACATGTCCTTAACTTGTAAGGAATATTACGATCCTAACCGGTC 1498 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 TCTGAGCGTGTATGCCGACATGTCCTTAACTTGTAAGGAATATTACGATCCTAACCGGTC 1605 Query 1499 GATGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACGAACTGACTCTGACAT 1558 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1606 AATGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACGGACTGATTCTGACAT 1665 Query 1559 CATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCA 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1666 CATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCA 1725 Query 1619 AAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAAACTCCAAGGTCTGTGTATAAGAC 1678 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 1726 AAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAGACTCCAAGATCTGTGTACAAGAC 1785 Query 1679 CATCCCAAACTGTGAACCATGTCGTCCTCTACAGAGATCACCTATTCAAGGGTTCTACTT 1738 ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| Sbjct 1786 CATCCCAAACTGTGAACCATGTCGTCCTCTACAAAGATCACCTATTGAAGGATTCTACTT 1845 Query 1739 AGCTGGAGATTACACAAAACAGAAGTACTTAGCTTCCATGGAAGGCGCGGTTCTCTCTGG 1798 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1846 AGCTGGAGATTACACAAAACAGAAGTACTTAGCTTCCATGGAAGGCGCTGTCCTCTCTGG 1905 Query 1799 CAAATTCTGCTCACAGTCTATTGTGCAGGATTACGAGCTACTGGCTGCATCTGGATCGAG 1858 |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | || Sbjct 1906 CAAATTCTGCTCTCAGTCTATTGTTCAGGATTACGAGCTACTGGCTGCGTCTGGACCAAG 1965 Query 1859 AAAGTTATCGGAGGCAACAGTatcatcatcatcatcatGAGAGAGGACAAAGCTTAAAGA 1918 |||||| ||||||||||||||||||||||||| | || |||||||||| |||||||| Sbjct 1966 AAAGTTGTCGGAGGCAACAGTATCATCATCATGA----GA-AGAGGACAAAACTTAAAGA 2020 Query 1919 TGATTT-CTTGTAAGCATTATTATTTGTGTATAAATCTCACTGCAATCCAAAATTGACCC 1977 |||||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct 2021 TGATTTGCTTGTAAGCATTATTATTTGTGTATAAATCTCATTGCAATCCAAACTTAACCT 2080 Query 1978 TACTCTCTTCAGTAAATGAATCTCACAAATTTGACATCTC---TTT-----AA----A-A 2024 ||||||||||||||||||||||||||| |||||||||||| ||| || | | Sbjct 2081 TACTCTCTTCAGTAAATGAATCTCACAGATTTGACATCTCACGTTTCTGTCAATTTTATA 2140 Query 2025 G-----A----GTAATTACTGTCGAGCTTTTGTAATCATAGTGATTTATCATTATGTCTC 2075 | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2141 ATTTTTAAAAAGTAATTACTGTCGACCTTTTGTAATCATAGTGATTTATCATTATGTCTC 2200 Query 2076 TCTCTTT 2082 ||| ||| Sbjct 2201 TCTTTTT 2207 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103212320520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5