BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493510

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14020.1 | Symbols:  | Rapid alkalinization factor (RALF) fa...   747    0.0  


> AT4G14020.1 | Symbols:  | Rapid alkalinization factor (RALF) 
family protein | chr4:8095215-8095736 REVERSE LENGTH=522
Length=522

 Score =  747 bits (404),  Expect = 0.0
 Identities = 460/487 (94%), Gaps = 4/487 (1%)
 Strand=Plus/Plus

Query  1    AAGAAACATCAAGCATGGAGTACTACACATTTACCGAAAACGACGAAGAACGTGTATCGC  60
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  18   AAGAAACATCAATCATGGAGTACTACACATTTACCGAAAACGACGAAGAACGTGTATCGA  77

Query  61   GAAATCATCACGTGAAGAACACGTGGGTGAAAGAACGTTACGAGAGCGATGAAGAAGATG  120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   GAAATCATCACGTGAATAACACGTGGGTGAAAGAACGTTACGAGAGCGATGAAGAAGATG  137

Query  121  GAGAGGTGAACAAACTTATCCTAAAGGAAGATGAAGAAACTAAAGATGTGGTGACATCAT  180
            |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  138  GAGAGGTGAACAAACTCATCCTAAAGGAAGATGAAGAAACTAAAGATATGGTGACATCAC  197

Query  181  CGAATGGTGAGGGGATGATGTTGACAAGTAAGGTGAGGTATCTCAACTATGGAGCTCTCA  240
            ||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  198  CGAGTGGTGAGAGGATGATGTTAACAAGTAAGGTGAGGTATCTCACCTATGGAGCTCTCA  257

Query  241  AACATGACACGGCGGCTCCGGCAGCTTCCGGTGGTGGAGGAAGAGCCTTGCCTCTTCCAT  300
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct  258  AACATGACACGGCGGCTTCGGCAGCTTCCGGTGGTGGAGGAAGAGCCTTGCCTCATCCGT  317

Query  301  CGAACAGGTACCACCGTGGTCACCCCAAGTACTACAGATGCAGAGGTTGAAGTGAAAACT  360
            |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  318  CGAACAAGTACAACCGTGGCCACCCCAAGTACTACAGATGCAGAGGTTGAAGTGAAAACT  377

Query  361  CTCCGCTGATAAAATAATTTCGAATTAATTAAT---AATAACCCTATATTGTATAAATAA  417
            ||| |||||||||||||||||||||||||||||   |||||||||||||||||||| |||
Sbjct  378  CTCTGCTGATAAAATAATTTCGAATTAATTAATTGTAATAACCCTATATTGTATAA-TAA  436

Query  418  GTTTGGTGAGTATGTATACTCCATGCAACGTGTGTTATCTATGTGCTTGTACTTCCCCTT  477
            ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||  ||
Sbjct  437  GTTTGTTGAGTATGTATACTCCATGCAACGTGTGTTATCTATGTGCTTGCAATTCCTATT  496

Query  478  TTTATAT  484
             ||||||
Sbjct  497  CTTATAT  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5