BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493510 Length=484 Score E Sequences producing significant alignments: (Bits) Value AT4G14020.1 | Symbols: | Rapid alkalinization factor (RALF) fa... 747 0.0 > AT4G14020.1 | Symbols: | Rapid alkalinization factor (RALF) family protein | chr4:8095215-8095736 REVERSE LENGTH=522 Length=522 Score = 747 bits (404), Expect = 0.0 Identities = 460/487 (94%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 1 AAGAAACATCAAGCATGGAGTACTACACATTTACCGAAAACGACGAAGAACGTGTATCGC 60 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18 AAGAAACATCAATCATGGAGTACTACACATTTACCGAAAACGACGAAGAACGTGTATCGA 77 Query 61 GAAATCATCACGTGAAGAACACGTGGGTGAAAGAACGTTACGAGAGCGATGAAGAAGATG 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 78 GAAATCATCACGTGAATAACACGTGGGTGAAAGAACGTTACGAGAGCGATGAAGAAGATG 137 Query 121 GAGAGGTGAACAAACTTATCCTAAAGGAAGATGAAGAAACTAAAGATGTGGTGACATCAT 180 |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 138 GAGAGGTGAACAAACTCATCCTAAAGGAAGATGAAGAAACTAAAGATATGGTGACATCAC 197 Query 181 CGAATGGTGAGGGGATGATGTTGACAAGTAAGGTGAGGTATCTCAACTATGGAGCTCTCA 240 ||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 198 CGAGTGGTGAGAGGATGATGTTAACAAGTAAGGTGAGGTATCTCACCTATGGAGCTCTCA 257 Query 241 AACATGACACGGCGGCTCCGGCAGCTTCCGGTGGTGGAGGAAGAGCCTTGCCTCTTCCAT 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | Sbjct 258 AACATGACACGGCGGCTTCGGCAGCTTCCGGTGGTGGAGGAAGAGCCTTGCCTCATCCGT 317 Query 301 CGAACAGGTACCACCGTGGTCACCCCAAGTACTACAGATGCAGAGGTTGAAGTGAAAACT 360 |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 318 CGAACAAGTACAACCGTGGCCACCCCAAGTACTACAGATGCAGAGGTTGAAGTGAAAACT 377 Query 361 CTCCGCTGATAAAATAATTTCGAATTAATTAAT---AATAACCCTATATTGTATAAATAA 417 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 378 CTCTGCTGATAAAATAATTTCGAATTAATTAATTGTAATAACCCTATATTGTATAA-TAA 436 Query 418 GTTTGGTGAGTATGTATACTCCATGCAACGTGTGTTATCTATGTGCTTGTACTTCCCCTT 477 ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| || Sbjct 437 GTTTGTTGAGTATGTATACTCCATGCAACGTGTGTTATCTATGTGCTTGCAATTCCTATT 496 Query 478 TTTATAT 484 |||||| Sbjct 497 CTTATAT 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23057473473 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5