BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493534
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13800.1 | Symbols: | Protein of unknown function (DUF803) ... 2093 0.0
AT3G23870.1 | Symbols: | Protein of unknown function (DUF803) ... 939 0.0
> AT4G13800.1 | Symbols: | Protein of unknown function (DUF803)
| chr4:8001862-8004139 REVERSE LENGTH=1559
Length=1559
Score = 2093 bits (1133), Expect = 0.0
Identities = 1391/1508 (92%), Gaps = 47/1508 (3%)
Strand=Plus/Plus
Query 34 TTTTCGGAACATAACTAGTGAGGCAATTGCTAAAATTAATTAGTAATTATGTGTTTTATG 93
||||| |||||| | | |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 50 TTTTCAGAACATGATTGGTGAGGCAATTGCTAAAATTAAATAGTACTTATGTGTTTTATG 109
Query 94 TTGA--GTTTGATTATAAAGTGGATATTTAT-TCTGATTCTTATTTGTTTGTG--TGttt 148
|||| |||||||| ||| |||| |||| | || |||||||||||||||||| | |||
Sbjct 110 TTGATTTTTTGATTAGAAAATGGACATTT-TGTCCGATTCTTATTTGTTTGTGTTTTTTT 168
Query 149 tttttGTAGACGCAAT-AGCTATCTTCAGCCTAAACTTTCTGGAATTTTTCATCATTAGC 207
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 169 TTTTTGTAGACGCAATAAGCTATCTTCAGCCTAAACTTTCTGGAAATTTTCGTCATTAGT 228
Query 208 AACCTGAAAAATTATCTTAATTTGTACATAAGCAAAACTATAAATATTAGCAAAGATGGA 267
|||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 229 AACCTG--AAATTATCTTAACTTGTATATAAGCAAGACTATAAATATTAGCAAAGATGGA 286
Query 268 GGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGTGTCTTCGAGTATATTCAT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGTGTCTTCGAGTATATTCAT 346
Query 328 TGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGCCGGTGTTAGCGGCGCCAG 387
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGCCGGTGTTAGCGGCGCCAG 406
Query 388 AGCAGGTGAAGGAGGGTATGGATACTTGTATGAACCTTGGTGGTGGGCTGGGATGATAAC 447
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 407 AGCAGGTGAAGGAGGATATGGATACTTATATGAACCTTGGTGGTGGGCTGGAATGATAAC 466
Query 448 TATGATTGTTGGGGAGATAGCCAATTTTGCAGCTTATGCATTTGCACCGGCTATTCTAGT 507
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 467 AATGATTGTTGGGGAGATAGCCAATTTTGCAGCATATGCATTTGCACCGGCTATTCTAGT 526
Query 508 GACACCTTTGGGAGCTCTAAGTATTATTTTCAGCGCAGTGCTAGCACATTTTATTTTGGA 567
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AACACCTTTGGGAGCTTTAAGTATTATTTTCAGCGCAGTGCTAGCACATTTTATTTTGGA 586
Query 568 AGAGAAGTTGCATAT-TTTCGGTATACTTGGCTGTGTCCTCTGCGTTGTTGGATCTACAA 626
||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 587 AGAGAAGTTGCATATGTTT-GGTATACTTGGTTGTGTCCTCTGTGTTGTTGGATCTACAA 645
Query 627 CGATTGTTTTACATGCTCCTCACGAGCAAGACATTGAATCAGTCAAGCAAGTATGGCACC 686
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 646 CGATTGTTTTACATGCTCCTCACGAGCAAGGCATTGAATCCGTCAAGCAAGTATGGCACC 705
Query 687 TTGCTACCGAACCAGGTTTCCTTGCGTATTCTGCTGTGGTTTTGGTTGTGGTGCTTGCAT 746
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 706 TTGCTACCGAACCAGGTTTCCTTGCATATTCTGCTGTGGTCTTGGTTGTGGTGCTTGCAT 765
Query 747 TGATCTTCTATTACGAGCCGCGTTATGGGAAGACGCATATGATAGTATATGTTGGGATTT 806
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGATCTTTTACTATGAGCCGCGTTATGGGAAGACGCATATGATAGTATATGTTGGGATTT 825
Query 807 GCTCTTTAATGGGCTCTCTTACAGTTATGAGTGTTAAAGCTGTGGCGATCGCCATAAAGC 866
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GCTCTCTAATGGGCTCTCTTACAGTTATGAGTGTTAAAGCTGTGGCGATCGCCATAAAGC 885
Query 867 TGACTTTTTCCGGGATGAATCAGTTCAAGTACTTCCACGCATGGATCTTTATCATAGTAG 926
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 886 TGACTTTTTCCGGGATGAACCAATTCAAGTACTTCCACGCATGGATCTTCATCATAGTAG 945
Query 927 TGACCATATGTTGCATTTTACAAATCAACTACTTGAACAAGGCTCTGGATAATTTCAACA 986
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGACCATATGTTGCATTTTGCAAATCAACTACTTGAACAAGGCTCTGGATAATTTCAACA 1005
Query 987 CAGCGGTCATATCTCCAGTTTACTACGTTATGTTTACAACATTCACCATCTTAGCTAGCA 1046
|||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1006 CAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTA 1065
Query 1047 TGATCATGTTCAAGGACTGGGCTTCTCAAAGCGGATTGCAAATTGCGACCGAGCTATGTG 1106
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1066 TGATCATGTTCAAGGATTGGGCTTCTCAAAGTGGATTGCAAATTGCTACCGAGCTATGTG 1125
Query 1107 GCTTTGTGACCATTTTGTCAGGAACCTTTCTTCTCCATAAGACAAAGGACATGGGAAACA 1166
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1126 GCTTTGTGACCATTTTGTCAGGAACTTTTCTTCTCCACAAGACAAAAGACATGGGAAACA 1185
Query 1167 GTGCCAGCTTACGCGGCTCCACATCGCACTCGCCTAGAGATACTCCTGTCTTCATAAACT 1226
|| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1186 GTACCAGCTTACGCGGCTCCACATCACACTCGCCTAGAGACACTCCTGTCTTCATAAACT 1245
Query 1227 CAGGTTCCAGTCGCAGTTCCAATTCCACTAGGCCTGCAATTTTATAATCCCATGGCTCCG 1286
|||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1246 CAGGTTCCAGTCGCAGCTCCAATTCCACTAGACCTGCAATACTATAATCCCACGGCTCCG 1305
Query 1287 ACGGTAGATCATCTAACGGTCTAGAACGAGGCAACACGAGCACAAAAGCCTCAAAGGGAA 1346
| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||
Sbjct 1306 ATAGTAGATCATCTAACGGTCAAGATCGAGGCAACACGAGCTCAAAAGCCTCAAAGAGAA 1365
Query 1347 CTTTTTT------A-AAA--A---------CAGAGCATATTGGGTTTAAG---GG-TATA 1384
||||||| | ||| | ||||||| || |||||||| || ||||
Sbjct 1366 CTTTTTTTGGGTGACAAATGAGAAAAAAAACAGAGCAAATGGGGTTTAATTAAGGCTATA 1425
Query 1385 ATTTATTTTTTGGATAAGGGAAGGTTTAGTGAATGATTTGTTAGGGATACTATTTGATTG 1444
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ATTGGTTTTTTGGATAACGGAAGGTTTAGTGAATGATTTGTTAGGGATACTATTTGATTG 1485
Query 1445 ATTGCTTCATGttt-ttt-ttt------------GTTTGTTTCTCATATGAGATATAAAG 1490
|||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 1486 ATTGCTTCATGTTTATTTGTTTCTAATATTTTTTGTTTGTTTCTCATATGAGATATAAAG 1545
Query 1491 AAAGTTTT 1498
||||||||
Sbjct 1546 AAAGTTTT 1553
> AT3G23870.1 | Symbols: | Protein of unknown function (DUF803)
| chr3:8619192-8621907 FORWARD LENGTH=1553
Length=1553
Score = 939 bits (508), Expect = 0.0
Identities = 855/1018 (84%), Gaps = 41/1018 (4%)
Strand=Plus/Plus
Query 251 ATAT-TAGCAAAGATGGAGGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGT 309
|||| |||| |||||||| | |||||||||||||| ||| |||||||||||||||| ||
Sbjct 381 ATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATTTTAGCAGT 440
Query 310 GTCTTCGAGTATATTCATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGC 369
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 441 GTCTTCAAGTATCTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTCAAGAAAGC 500
Query 370 CGGTGTTAGCGGCG-CCAGAGCAGGTGAAGGAGGGTATGGATACTTGTATGAACCTTGGT 428
||||| ||||| | || ||||||||||||||||||||||||||||| | || || ||||
Sbjct 501 CGGTGCAAGCGGTGTCC-GAGCAGGTGAAGGAGGGTATGGATACTTGAAGGAGCCATGGT 559
Query 429 GGTGGGCTGGGATGATAACTATGATTGTTGGGGA-GATAGCCAATTTTGCAGCTTATGCA 487
|||||||||| |||||||| |||||||||||||| | |||| ||||||||||| ||||||
Sbjct 560 GGTGGGCTGGAATGATAACAATGATTGTTGGGGAAG-TAGCTAATTTTGCAGCCTATGCA 618
Query 488 TTTGCACCGGCTATTCTAGTGACACCTTTGGGAGCTCTAAGTATTATTTTCAGCGCAGTG 547
||||||||||||||| | || ||||||||||||||| |||||||||| ||||||||||||
Sbjct 619 TTTGCACCGGCTATTTTGGTAACACCTTTGGGAGCTTTAAGTATTATATTCAGCGCAGTG 678
Query 548 CTAGCACATTTTATTTTGGAAGAGAAGTTGCATAT-TTTCGGTATACTTGGCTGTGTCCT 606
|| || |||||||||||| ||||||| |||||||| ||| || |||||||| || | ||
Sbjct 679 CTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGG-ATACTTGGTTGCATTCT 737
Query 607 CTGCGTTGTTGGATCTACAACGATTGTTTTACATGCTCCTCACGAGCAAGACATT-GAAT 665
||| |||||||| |||||||| || || ||||| || || || || || || | | ||||
Sbjct 738 CTGTGTTGTTGGGTCTACAACTATAGTCTTACACGCACCACATGAACA-GAAAATAGAAT 796
Query 666 CAGTCAAGCAAGTATGGCACCTTGCTACCGAACCAGGTTTCCTTGCGTATTCTGCTGTGG 725
||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct 797 CAGTCAAGCAAATATGGCAGCTTGCTATTGAACCAGGTTTCCTTGTGTATTCTGCTGTGA 856
Query 726 TTTTGGTTGTGGTG-CT-TGCATTGATCTTCTATTACGAGCCGCGTTATGGGAAGACGCA 783
|| || |||||||| || | | | ||||||||| || || ||||| || |||||||| ||
Sbjct 857 TTGTGATTGTGGTGGCTATAC-T-GATCTTCTACTATGAACCGCGCTACGGGAAGACTCA 914
Query 784 TATGATAGTATATGTTGGGATTTGCTCTTTAATGGGCTCTCTTACAGTTATGAGTGTTAA 843
|||||| |||||||| || || ||||| |||||||| |||||||| ||||||||||| ||
Sbjct 915 TATGATCGTATATGTCGGAATCTGCTCCTTAATGGGTTCTCTTACTGTTATGAGTGTCAA 974
Query 844 AGCTGTGGCGATCGCCAT-AAAGCTGACTTTTTCCGGGATGAATCAGTTCAAGTACTTCC 902
|||||||||||| || || ||| ||||| ||||| |||| ||||||||| || ||||||
Sbjct 975 AGCTGTGGCGATTGCGATTAAA-CTGACATTTTCAGGGACGAATCAGTTTAAATACTTCA 1033
Query 903 ACGCATGGATCTTT-ATCATAGTAGT-G-ACCATATGTTGCATTTTACAAATCAACTACT 959
|| | ||||| ||| || ||||||| | | | | ||||||||||| || ||||||||||
Sbjct 1034 ACACTTGGAT-TTTCATTTTAGTAGTTGCAAC-T-TGTTGCATTTTGCAGATCAACTACT 1090
Query 960 TGAACAAGGC-TCTGGATA-ATTTCAACACAGCGGTCATATCTCCAGTTTACTACGTTAT 1017
|||||||||| | |||||| ||| |||||||||||| || ||||| ||||||||||||||
Sbjct 1091 TGAACAAGGCAT-TGGATACATT-CAACACAGCGGTTATTTCTCCGGTTTACTACGTTAT 1148
Query 1018 GTTTACAACATTCACCATCTTAGCTAGCATGATCATGTTCAAGGACTGGGCTTCTCAAAG 1077
||| ||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1149 GTTCACAACATTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAG 1208
Query 1078 CGGATTGCAA-ATTGCGACCGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACCTTTC 1136
||||| || ||||| || ||| | ||||| |||||||| ||||| |||||||| ||||
Sbjct 1209 TGGATTA-AAGATTGCAACAGAGTTGTGTGGTTTTGTGACGATTTTATCAGGAACTTTTC 1267
Query 1137 TTCTCCATAAGAC-AAAGGACATGGGAAACAGTGCCAGCT--TACGCGGCTCCACATCGC 1193
| || || ||||| |||| | |||||||||||||| || | | || || || | || |
Sbjct 1268 TGCTTCACAAGACCAAAG-ATATGGGAAACAGTGCAAG-TGGT-CGTGGTTCTA--TCTC 1322
Query 1194 ACTCGCCTA---GAGATACTCCTGTCTTCA-TAAACTCAGGTTCCAGTCGCAGTTCCA 1247
| | ||||| |||| ||||||||||||| ||| ||||| ||| |||| || ||||
Sbjct 1323 AAT-GCCTACTAGAGACACTCCTGTCTTCACTAAT-TCAGGATCCGGTCGGAGCTCCA 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5