BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493559
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1408 0.0
> AT4G13530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G10080.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:7866719-7868742 FORWARD LENGTH=1089
Length=1089
Score = 1408 bits (762), Expect = 0.0
Identities = 933/1009 (92%), Gaps = 38/1009 (4%)
Strand=Plus/Plus
Query 1 aaaaaaaaCCTAACTTTGACATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCT 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AAAAAACCCCTAACTTTGACATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCT 129
Query 61 CGAGATCTACAACGGAGGATGATAATTCGAGGAACTTGGAGGAGATTGAAGATGACACGC 120
|||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||| |||||
Sbjct 130 CGAGATCTACCACGGAAGATGACAATTCGAGGAGCTTGGAGGAGATTGATGATGGCACGC 189
Query 121 AAGGTATGATTAGGTTTGATCACTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTGTGG 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 190 AAGGTATGATTAGGTTTGATCATTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTTTGG 249
Query 181 AGGAAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGCTGGATCGAACCTAGCT 240
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 AGGCAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGATGGATCGAACCTAGCT 309
Query 241 CCGATGCTCCTTATGGTCCTAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATC 300
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CCGATGTTCCTTATGGTCCGAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATC 369
Query 301 GGCTTGAGGAACAGAGGTTAGTGGATGATGA--TG--T-----GA-----AT-------A 339
||||||| || |||||||||||||||||||| || | || || |
Sbjct 370 GGCTTGATGATCAGAGGTTAGTGGATGATGATGTGAATAACGAGATGGGTATAGAGAGAA 429
Query 340 ACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCACAAGACATGGATTTGATGAGCT 399
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 430 ACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCTCAAGACATGGATTTGATAAGCT 489
Query 400 CTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAGACTCTGTTT 459
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 490 CTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAAACTCTGTTT 549
Query 460 CGGTTGATCCTTGTGTTAAATCTGGTGGTGGTGGTGGAGGAGGAGAAGAG-AAGGGTTTT 518
| |||||||| |||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 550 CTATTGATCCTGGTGTTAAATC------TGGTGGTGGAGGAGGAGAAGAGAAAGGG-TTT 602
Query 519 CTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATT 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATT 662
Query 579 TGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTAC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTAC 722
Query 639 AATATGAAGAAGAAGAGTCGTACCTTGCAGCTTAAGGTTCTTTTGGATGATAAG--G-TG 695
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||
Sbjct 723 AATATGAAGAAGAAGACTCGTTCCTTGCAGCTTAAGGTTCTTTTGGATGATAAGAAGGTG 782
Query 696 GCTAATCATTCTGCTCGGTGGAACGAAGCTATCTCAGTAGTGAAACGTGTACCCCTAATC 755
|| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||| |||||
Sbjct 783 GCGAATCATGCTGCTCGGTGGAACGAAGCAATCTCGGTAGTGAAACGTGTGCCCATAATC 842
Query 756 CGGCCAGCACTTCCATCATCAGTGGGTATGATGAACCAGTGGTCCATGATGAGTTTAAGG 815
|||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 843 CGGCCAGCACTTCCGTCATCAGTGGGTATGA--A-CCAGTGGTCCATGATGAGTTTAAGG 899
Query 816 TGAAAGAT-AAGTGAATTTGAGGGCATAATAATGCATATATGTGAGATGAAATGATT-GA 873
||||| || ||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 900 TGAAA-ATTAAGTGAATTTGAGGGCATAATAATGCATATATGTGAGATTATATGATTTGA 958
Query 874 TATGGTTGGTGCATGTATCATATGATTGTATaaaaaatgttacaaaaacatacaaaaaTA 933
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 959 TGTGGTTGGTGCATGTATCATATGATTGTATTAAAAATGTTACAAAAACATACAAAAAGA 1018
Query 934 TGCGTGTAAGTTTGTACTGTGTGTGTATATATTGTTACTTGCTTGGTGG 982
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCTTGTAAGTTTGTACTGTGTGTGTATATATTGTTACTTGCTTGGTGG 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5