BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493563 Length=743 Score E Sequences producing significant alignments: (Bits) Value AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1094 0.0 AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 357 9e-98 AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 267 1e-70 > AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484 REVERSE LENGTH=743 Length=743 Score = 1094 bits (592), Expect = 0.0 Identities = 693/743 (93%), Gaps = 1/743 (0%) Strand=Plus/Plus Query 1 ACAGAAATGTACTGCTGCAATCAGGCGTCTGGCATATGGTCTTGCAAACGATGCGATGGA 60 ||||||||||||| | ||||| ||||||||||||||||||||||||||| ||| |||| | Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60 Query 61 CGAATACCTCCGGATGGGCGCAACCACTGTGAGTCAAGCACTAGAGAATTTTGTAGATGG 120 || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120 Query 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGGCCTACACGTGAGGATCTAGAACG 180 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180 Query 181 ATTACTTCATTCTGGAAAAGAACGCGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240 Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300 ||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||||| Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300 Query 301 AAAACCCACTATCGTTCTAGAGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCttt 360 |||| ||||||| || ||||||||||| ||| |||||| |||||||||| |||||||| Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360 Query 361 ttttGGGGCTCCAGGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGTTTGA 420 |||||||| || || |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 TTTTGGGGTTCAAG-TACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419 Query 421 TGATATATTAGAAAGTCGAGCTCCACGACTCAGGTACGAAGTCAATGGACATCAATACAA 480 ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479 Query 481 CATGGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 540 |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539 Query 541 TACCCGCCCACAAGGACAGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 600 |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599 Query 601 AGATGTCGAGCGTGCTTTTGAAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 660 ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||| ||| Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659 Query 661 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 720 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719 Query 721 TATGATTGTAGAAGATGAACGAG 743 ||||||| |||||||| |||||| Sbjct 720 TATGATTATAGAAGATAAACGAG 742 > AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475 REVERSE LENGTH=3840 Length=3840 Score = 357 bits (193), Expect = 9e-98 Identities = 437/553 (79%), Gaps = 24/553 (4%) Strand=Plus/Plus Query 203 CGCGGA-TTTCCGGGAATGGTAGGAAGCATTGACTGTATGCATTGGGAGTGGAAGAATTG 261 |||||| |||| ||| ||| | |||||||| ||||||||||||||||||||||||||||| Sbjct 546 CGCGGATTTTCAGGG-ATGATTGGAAGCATCGACTGTATGCATTGGGAGTGGAAGAATTG 604 Query 262 TCCTACGGCTTGGAAAGGGCAGTATTCACGCGGA-CATGGAAAACCCACTATCGTTCTAG 320 || || |||||||||| |||||| | || || | ||||||||| ||||| ||| ||| Sbjct 605 CCCCACCTCTTGGAAAGGCCAGTATACGCGAGGCTC-TGGAAAACCAACTATTGTTTTAG 663 Query 321 AGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCtttttttGGGGCTCCAGGTACGT 380 |||| || |||||||||||| | ||||| || || || |||||||| ||| |||||| | Sbjct 664 AGGCAGTCGCATCACAAGATCTCTGGATATGACACGCGTTTTTTGGACCTCTAGGTACCT 723 Query 381 GTAAT-GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAAGTCGA 439 ||| ||||| ||| ||||||| || ||||| || |||||||| || ||| || ||||| Sbjct 724 -TAAACGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGA 782 Query 440 GCTCCACGACTCAG-GT-ACGAAGTCAATGGAC-ATCAATACAACATGGGTTATTACCTC 496 |||||| | | | || | || ||||| |||| | | || || ||| ||| || ||| Sbjct 783 GCTCCAA-A-TGTGCGTTATGAGGTCAACGGACGAG-AGTATAATTTGGCTTACTATCTC 839 Query 497 ACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAATTACC-CGCCCACAAGG 555 |||||||||||||| ||||| ||||| || || || ||||| ||| | | |||||||| Sbjct 840 ACAGATGGTATATAACCGAAATGGGCGACTTTTATACAATCTATT-CGACTTCCACAAGG 898 Query 556 ACAGAAAG-CATCATTATTTGC-T-AGTTGTCAAGAAGCAGTGAGAAAAGATGTCGAGCG 612 | |||| |||| |||||||| | | | ||||||||| || | |||||||||||||| Sbjct 899 TC-GAAAATCATCTTTATTTGCATCA-TA-TCAAGAAGCCGTTCGTAAAGATGTCGAGCG 955 Query 613 TGCTTTTGAAGTCTTGCAGGCTCGGTTTG-CTATTATTCGAAACCCAGGTCTGT-TTTGG 670 ||| |||| ||| ||| | ||||||||| | |||||| |||||||| ||| | ||||| Sbjct 956 TGCATTTGGAGTATTGTAAGCTCGGTTTCAC-ATTATTAAAAACCCAGCTCT-TATTTGG 1013 Query 671 GATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTGTA 730 ||||| || ||| || || || ||| | ||||||||||||||||||||||||||||| Sbjct 1014 GATAAGGAAAAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATTGTT 1073 Query 731 GAAGATGAACGAG 743 ||||| ||||||| Sbjct 1074 GAAGACGAACGAG 1086 > AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015 REVERSE LENGTH=911 Length=911 Score = 267 bits (144), Expect = 1e-70 Identities = 384/495 (78%), Gaps = 35/495 (7%) Strand=Plus/Plus Query 270 CTTGGAAAGGGCAGTATTCACGCG-GAC-ATGGAAAACCCACTATCGTTCTAGAGGCCGT 327 |||||||||| ||||| | ||||| | | ||||||||| || || ||| ||||||| || Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284 Query 328 GGCATCACAAGATTTATGGATTTGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AAT 385 |||||||||||| | ||||| ||||| || ||||||||| |||||||||| | | || Sbjct 285 CGCATCACAAGATCTCTGGATATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAAC 343 Query 386 GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAAGTCGAGCTCCA 445 ||||| ||| ||||||| || ||||| || |||||||| || ||| || ||||||||||| Sbjct 344 GATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCCA 403 Query 446 CGACTCAG-G-TACGAA-GTCAA--TGGACA-TC-A-A-TACAACATGGGTTATTACCTC 496 | | | | ||| || ||||| | ||| | | | || || ||| ||| || ||| Sbjct 404 --AATTTGCGTTAC-AAGGTCAACGTCAACAGACGAGAGTATAATTTGGCTTACTATCTC 460 Query 497 ACAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC-CCGCCCACAAG 554 |||||||||||||||||||| | || | || || |||||||| ||| | | ||||||| Sbjct 461 ACAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACTTCCACAAG 518 Query 555 GACAG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAGCAGTGAGAAAAGATGTCGAGC 611 | | | ||| |||| |||||||| | | | ||||||| | || | ||||||||||||| Sbjct 519 GTC-GAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGAGC 575 Query 612 GTGCTTTTGAAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-TTTG 669 |||| |||| ||| ||||| ||||||||| | |||||| ||||||| ||| | |||| Sbjct 576 GTGCATTTGGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TATTTG 633 Query 670 GGATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTG 728 |||||| || ||| || || || ||| || ||||||||||||||||||||||||||| Sbjct 634 GGATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGATTG 692 Query 729 TAGAAGATGAACGAG 743 | ||||| ||||||| Sbjct 693 TTGAAGACGAACGAG 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36068117546 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5