BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493566 Length=1033 Score E Sequences producing significant alignments: (Bits) Value AT5G32440.3 | Symbols: | Ubiquitin system component Cue protei... 1483 0.0 > AT5G32440.3 | Symbols: | Ubiquitin system component Cue protein | chr5:12076893-12078603 FORWARD LENGTH=1126 Length=1126 Score = 1483 bits (803), Expect = 0.0 Identities = 933/992 (94%), Gaps = 23/992 (2%) Strand=Plus/Plus Query 27 TGCGAACATCTTTAAGATCCGATAAAAGTCTTGTTCGAGAGATCTGAAGGAAGAAGAAGA 86 |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| Sbjct 44 TGCGAACATCTTTAAGATCCGATAAAAGACTTGTTTGAGAGATCTCAAGGAAGAAGAAGA 103 Query 87 A-GGGGGAAGCAGATAACATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTTGAGGAC 145 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 104 AGGGGGGAAGCAGATAACATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTCGAGGAC 163 Query 146 TTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGCTTTTCTTCGTCTTCTCCG 205 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 164 TTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGCTTTTCTTCATCTTCTTCG 223 Query 206 GCTCGTTTTTCTCATCCGATTCCGCCTTCGTCTTCGCTTCTTCTCGATCACCTCGCCGCG 265 |||||||||||| ||||||||| ||||| || || |||||||||||||||||||||||| Sbjct 224 TCTCGTTTTTCTCCTCCGATTCCTCCTTCTTCCTCACTTCTTCTCGATCACCTCGCCGCG 283 Query 266 ATTTTCCCCGATATGGATAAGAAGATTCTTGAGAGGGCAATCGAGGAATGTGGTGATGAT 325 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 284 ATTTTCCCCGATATGGATAAGCAGATTCTTGAGAGGGCAATCGAGGAATGTGGAGATGAC 343 Query 326 CTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCA 385 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 344 CTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCT 403 Query 386 GATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAAGCAAATGTTGAACCTCAGCAG 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 404 GATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAACCAAATGTTGAACCTCAACAG 463 Query 446 CAA-G--GATCAGCCAAGGAGGAAGCACATGTCTTGAACTTGGATGGTACAGAGTGGGTT 502 ||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 464 CAAGGTAGATCAGCCAAGGAGGAACCAAATGTCTTGAACTTGGATGGTACAGAGTGGGTT 523 Query 503 GAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCT 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 GAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCT 583 Query 563 GCAAGAGCATTGGAAGCTTTGGAGAAGTCAATCAATGCACGTACTGGTACTGAAGCAATG 622 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 584 GCAAGAGCATTGGAAGCTTTGGAGAAGTCAATTAATGCACGTACTGGTACTGACGCAATG 643 Query 623 CAAAATCTCCAACAGGAAAACATGATGCTGAAGCAACAATTAGAAGCCATTGTACAGGAA 682 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 644 CAAAATCTCCAACAGGAAAACATGATGCTGAAGCAGCAATTAGAAGCTATTGTACAGGAA 703 Query 683 AACAGTTTACTAAAACGAGCGGTAGTGACGCAGCAGAAGCGGCAGAGAGAATCAGAAGAC 742 ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||| Sbjct 704 AACAGTTTACTGAAACGAGCGGTAGTGACACAGCAGAAGCGGCAAAGAGAATCGGAAGAC 763 Query 743 CAAAGTCAGGAATTGCAGCATTTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGA 802 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 764 CAAAGTCAGGAATTGCAGCATCTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGA 823 Query 803 ACTTTAGAGGTGAACAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGT 862 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 ACTTTAGAGGTGAATAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGT 883 Query 863 TCCATCCCGGGCCGGTACCATCCAGACGTCTTCTAATACTTTGTGAG----T-GT-T--T 914 ||||||||||| ||||||||||||||||||||||||||||||||||| | || | | Sbjct 884 TCCATCCCGGGGCGGTACCATCCAGACGTCTTCTAATACTTTGTGAGGCCCTCGTATCAT 943 Query 915 -------CCAATGTATTTTTCTCTGTTGGTTTGTGACTATT-ATATACGAAGTCTGG-AA 965 ||| |||||||||||||||||||||||||||||| ||||| | || || || Sbjct 944 TTTGTTTCCAGTGTATTTTTCTCTGTTGGTTTGTGACTATTTATATAT-AT-TCGGGGAA 1001 Query 966 TCAAAACTGTGtttttttGTTGTTGTTGTTGT 997 ||||||||||||| |||||||||||||||||| Sbjct 1002 TCAAAACTGTGTTCTTTTGTTGTTGTTGTTGT 1033 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50636020176 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5