BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493567 Length=958 Score E Sequences producing significant alignments: (Bits) Value AT5G32450.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 1483 0.0 > AT5G32450.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:12079611-12081573 FORWARD LENGTH=1156 Length=1156 Score = 1483 bits (803), Expect = 0.0 Identities = 910/961 (95%), Gaps = 10/961 (1%) Strand=Plus/Plus Query 2 GACGTCTGGGCTGTTCAAAATC-TTTCTTCTCTCTT-GGTCAAGAA--ATTATTCTCTCG 57 |||| ||||||||||||||||| ||||||||||||| ||||| || |||||||||||| Sbjct 11 GACGGCTGGGCTGTTCAAAATCATTTCTTCTCTCTTCCGTCAA-AATTATTATTCTCTCG 69 Query 58 CAGTCGTCAAGAGCTAGCTTCCTTCTACAACAATGCAGACAACGAGAAGTGTTCAAGTAA 117 |||||||| | || ||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 70 CAGTCGTC-A-AG--AGCTT-CTTCTACAACAATGCAGACGACGAGAAGTGTTCAAGTAA 124 Query 118 ATAATGTCTCAGATCTAGCCACGGAGAGGGAGATTCACGAGTTTTTCTCCTTCTCAGGCG 177 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 125 ATAATGTCTCAGATCTAGCCACAGAGAGAGAGATTCACGAGTTTTTCTCCTTCTCAGGCG 184 Query 178 ACATAGAACACATTGAAATCCAAAAAGAAGTTGGCCAGTCTCGAATCGCATTTGTTACAT 237 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 185 ACATAGAACACATTGAAATCCAAAAAGAATTTGGACAGTCTCGAATCGCATTTGTTACAT 244 Query 238 TTACTGACCCCAAAGCCCTTGAAATTGCCTTGTTATTATCGGGTGCGACGATTGTGGACC 297 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 245 TTACTGATCCCAAAGCCCTCGAAATTGCCTTGTTATTATCGGGTGCGACGATTGTGGACC 304 Query 298 AGATTGTTACAATAACTCGAGCTGAAAACTATGTTCAGAGGCGTGAGATGCAGGAAGTAA 357 |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 305 AGATTGTTACAATAACACGAGCTGAAAACTATGTTCAGAGGCGTGAGACACAGGAAGTAA 364 Query 358 GAATGGTGGACAACGCGATGCCCCTTGGTCTTCCAGAGAGTACTACACAGACCAAAACTA 417 ||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||| | Sbjct 365 GAATGTTGGACAACGCGATGCCTCTTGGTCTTCAAGAGAGTACTACACAGACTAAAACGA 424 Query 418 CCGCGGATGGCAATAGTAGAGCATATGTTAGCAAAGCACAAGATGTGGTGGCAACTGTTT 477 | |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 425 ACATGGATGGTAATAGTAGAGCATACGTTAGCAAAGCACAAGATGTGGTGGCAACGGTTT 484 Query 478 TGGCAAAAGGTTCTGCTCTTGGACAAGATGCAGTGAATAAAGCCAAGGCTTTCGACCAAA 537 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 485 TGGCAAAAGGGTCTGCTCTTGGACAAGATGCAGTGAATAAAGCCAAGGCTTTCGACGAAA 544 Query 538 AGCATCAATTAAGAGCCAATGCTTCTGCCAAAGTTTCATCTTTTGACAAGCGAGTTGGGC 597 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 545 AGCACCAATTAAGAGCCAATGCTTCTGCTAAAGTTTCATCTTTTGACAAGCGAGTTGGTC 604 Query 598 TTACTGAGAAGTTAACTGTTGGTATTTCTGCCGTTAACGAGAAAGTAAAATCTGTTGATC 657 |||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 605 TTACTGAGAAGTTATCTGTTGGTATTTCTGCTGTTAATGAGAAAGTTAAATCTGTTGATC 664 Query 658 AAAAGCTTCAGGTCTCCGATAAAACCATGGCAGCAATATTTGCAGCCGAGAAGAAATTAA 717 |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| Sbjct 665 AAAAGCTTCAAGTCTCCGATAAAACTATGGCAGCAATATTTGCAGCCGAGAGGAAGTTAA 724 Query 718 ACGACACTGGTTCAGCTGTCAAATCAAGCAGGTACGTGACTGCTGGAGCTGCTTGGTTTA 777 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 ACGACACGGGTTCAGCTGTCAAATCAAGCAGGTACGTGACTGCTGGAGCTGCTTGGTTTA 784 Query 778 GTGGTGCTTTTAGTAAAGTGGCGAGAGTAGGTCAGGTTGCTGGCTCAAAAACCAAAGAGA 837 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 GTGGCGCTTTTAGTAAAGTGGCGAGAGTAGGTCAGGTTGCTGGCTCAAAAACCAAAGAGA 844 Query 838 AGTTCAATCTAGCCGTCTCAAATATGAGTTCCAAGGATACACCGATTGCTGTATAATAAA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 AGTTCAATCTAGCCGTCTCAAATATGAGTTCCAAGGATACACCGATTGCTGTATAATAAA 904 Query 898 GAGCTTGGAATCTAGTAAGCGTTGAAGTCAGGATCAACGAAAGTTGCTATGCTGGCCTTG 957 |||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 905 GAGCTTGGAATCAAGTAAGCGTTGAAGTCAGGATCAACGAAAGTTGCTATACTAGCCTTG 964 Query 958 T 958 | Sbjct 965 T 965 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46868459151 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5