BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493582 Length=1796 Score E Sequences producing significant alignments: (Bits) Value AT5G34940.2 | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13... 2682 0.0 > AT5G34940.2 | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13235829-13238839 REVERSE LENGTH=1815 Length=1815 Score = 2682 bits (1452), Expect = 0.0 Identities = 1687/1801 (94%), Gaps = 14/1801 (1%) Strand=Plus/Plus Query 1 TTTTTCGGAATGTGTGTCTGTCTTCCATTTCCATATATTATATAAACACCAAACGGAACG 60 ||||| ||||||||||||| |||||||||||||||||||||||||||||| | || | Sbjct 23 TTTTTTGGAATGTGTGTCTCTCTTCCATTTCCATATATTATATAAACACC--A---AATG 77 Query 61 AGATCTCA-TATTCTTATAAATAAAAAGAAAGAAGAGAGAAATAATGGGTTGTCGTCAAA 119 |||||||| | |||| |||||||| ||||||||||||||||| ||||| || |||||||| Sbjct 78 AGATCTCATTTTTCTAATAAATAAGAAGAAAGAAGAGAGAAACAATGGCTTATCGTCAAA 137 Query 120 -TTTGGATCATAGTTTTGTTTCTTTGTGTGTTTCAATTCTTGGACTGCACCGTTAGCTCC 178 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 138 TTTTGG-CCATAGTTTTGTTTCTTTGTGTGTTTCAATTCTTGGACTGCACTGTTAGCTCC 196 Query 179 GCCGTAGAAGAGACTGGGACGGTGTTTGTGTACGGAAGAGCGGCCGTGGGAACAATAGAC 238 ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 197 GCCGTAGAAGAGAATGGGACTGTGTTTGTGTACGGAAGAGCCGCCGTTGGAACAATAGAT 256 Query 239 GAAGACTTCATTTGCGCCACCTTAGACTGGTGGCCACCGGAGAAATGTGACTACGGCACT 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 257 GAAGACTTCATTTGCGCCACCTTAGACTGGTGGCCACCGGAGAAATGTGACTACGGCAGT 316 Query 299 TGTAGTTGGGACCATGCTTCCATTCTTAATCTGGACTTGAACAACACTATCCTTCAAAAT 358 |||||||||||||||||||| ||||| |||||||| ||||||||| ||| ||||||||| Sbjct 317 TGTAGTTGGGACCATGCTTCAATTCTCAATCTGGATTTGAACAACGTTATTCTTCAAAAT 376 Query 359 GCAATCAAAGCATTTTCTCCATTGAAAATAAGAATAGGAGGAACATTACAAGACATAGTC 418 ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 377 GCAATCAAAGCATTTGCTCCGTTGAAAATAAGAATAGGAGGAACATTACAAGACATAGTG 436 Query 419 ATATATGAGACACCAGA-TCAGAAGCAACCATGTCTTCCTTTTACCAAAAACTCTTCAAT 477 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 437 ATATATGAGACACCAGATTC-GAAGCAACCATGTCTTCCTTTTACCAAAAACTCTTCAAT 495 Query 478 TCTCTTTGGTTACACACAAGGATGTCTACCTATGCGTCGATGGGATGAGCTCAATGCCTT 537 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 496 TCTTTTTGGTTACACACAAGGATGTCTACCTATGCGTCGATGGGACGAGCTCAATGCCTT 555 Query 538 CTTTCGAAAAACCGGAGCTAGAGTCATCTTTGGACTGAATGCACTCTCTGGGCGTTCCAT 597 |||||| ||||||||| ||| ||||||||| || ||||||||||| ||||| |||||||| Sbjct 556 CTTTCGCAAAACCGGAACTAAAGTCATCTTCGGGCTGAATGCACTTTCTGGACGTTCCAT 615 Query 598 AAAACCAAACGGCGAAGCCATAGGAGCCTGGGACTACAGCAATGCTGAATCATTCATCCA 657 |||| | ||||| |||||||||||||||||| | |||| |||||||||||| ||||||| Sbjct 616 AAAATCTAACGGTGAAGCCATAGGAGCCTGGAATTACACCAATGCTGAATCGTTCATCCG 675 Query 658 ATTTACAGCACAGAATAACCACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGG 717 ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 676 GTTTACAGCAGAGAACAATTACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGG 735 Query 718 AAGTGGTGTTGGTGCACGAGTTGCAGCAAATCAGTATGCTATAGACACCATAAATCTACG 777 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 736 AAGTGGTGTTGGTGCACGAGTTGGTGCAAATCAATATGCTATAGACACCATAAATCTGCG 795 Query 778 AAACATCGTGAACCGGGTTTACAATAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGG 837 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 796 AAACATTGTGAACCGGGTTTACAAGAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGG 855 Query 838 TGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAACAGAAGACTCTCTCAA 897 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 856 TGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAGCAGAAAACTCTCTCAA 915 Query 898 TGCTACTACTCGGCATATCTACGATCTCGGTCCAGGAGTTGATGAACATCTGATAGAAAA 957 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 916 TGCTACTACTCGACATATCTACGATCTCGGTCCAGGAGTCGATGAACATCTGATAGAAAA 975 Query 958 GATTCTTAACCCTTCATATCTGGACGGAGAGGCAATAACG-TTTCGCAG-CGTCAAGAAG 1015 |||||| |||||||||||||||||| |||||||| || | |||||||| | ||||||| Sbjct 976 GATTCTAAACCCTTCATATCTGGACCAAGAGGCAA-AAAGTTTTCGCAGTC-TCAAGAAC 1033 Query 1016 ACAATaaaaaaaTCCTCAACCAAGGCCGTGGCATGGGTTGGTGAATCTGGTGGTGCCTAC 1075 | ||| ||||| |||||||| ||||| ||||||||||||||||| || |||||||||||| Sbjct 1034 ATAATCAAAAACTCCTCAACAAAGGCTGTGGCATGGGTTGGTGAGTCCGGTGGTGCCTAC 1093 Query 1076 AACAGCGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAG 1135 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1094 AACAGTGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAG 1153 Query 1136 CTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGA 1195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1154 CTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGA 1213 Query 1196 AACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGATTATTACAGTGCTCTG 1255 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1214 AACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGACTATTACAGTGCTCTG 1273 Query 1256 ATCTGGCGACAACTCATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAG 1315 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1274 ATCTGGCGACAACTTATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAG 1333 Query 1316 ATACGTTCATACACCCATTGTGCAAGACAATCAAAAGGGATTACAGTTTTACTGATGAAC 1375 |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1334 ATACGTTCGTACACCCATTGTGCAAGACAATCGAAAGGGATCACAGTTTTACTGATGAAC 1393 Query 1376 CTTGACAACACTACGACGGTTGTAGCGAAAGTAGAGTTAAATAAGACTTTCAGTCTAAGA 1435 |||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 1394 CTTGACAATACTACAACGGTTGTAGCGAAAGTAGAGTTAAATAACAGTTTCAGTCTGAGA 1453 Query 1436 CATACAAAGCACATGAAGTCTTATAAAAGAGCAACTTCCCAACTTCCACAGGATCCTAAT 1495 |||||||||||||||||||||||||||||||||| |||||||||| || ||||||| Sbjct 1454 CATACAAAGCACATGAAGTCTTATAAAAGAGCAAGTTCCCAACTTTTTGGGGGTCCTAAT 1513 Query 1496 GGGGAAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACTTACACAGTCAG 1555 || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1514 GGAGTAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACCTACACAGTCAG 1573 Query 1556 ACTATGCTACTCAATGGAAATGCTCTTCAGGTTAATTTGACGGGTGACTTACCTCCTATA 1615 |||||||||||||| |||||||||||||||||||||| || |||||| |||||||||||| Sbjct 1574 ACTATGCTACTCAACGGAAATGCTCTTCAGGTTAATTCGATGGGTGATTTACCTCCTATA 1633 Query 1616 GAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTT 1675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1634 GAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTT 1693 Query 1676 GTGCATATGCGGAGTGTTGTTGTACCTGCATGTGCTTAAGGTAGCTGCATATGGAACTTA 1735 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1694 GTGCATATGCGGAATGTTGTTGTACCTGCATGTGCTTAAGGTAGCTGCATATGGAACTTA 1753 Query 1736 AGACAGTTCCTCCATTCAGTTATTTGATCAGAGAAAAAGAAAGAAGTGTACCTTTCTTTC 1795 ||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 1754 AGACAGTTCCTTCATTCAGTTATTTGATTAGAGAAAAATAAAGAAGCGTACCTTTCTTTC 1813 Query 1796 A 1796 | Sbjct 1814 A 1814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88854964650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5