BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493595 Length=217 Score E Sequences producing significant alignments: (Bits) Value ATCG01270.1 | Symbols: ORF77.2 | Protein precursor Ycf15, putat... 390 2e-108 ATCG00870.1 | Symbols: ORF77.1 | Protein precursor Ycf15, putat... 390 2e-108 > ATCG01270.1 | Symbols: ORF77.2 | Protein precursor Ycf15, putative, chloroplast | chrC:144921-145154 REVERSE LENGTH=234 Length=234 Score = 390 bits (211), Expect = 2e-108 Identities = 215/217 (99%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75 Query 61 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 135 Query 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195 Query 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217 ||||||||||||||||||||||||||||||||||||| Sbjct 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232 > ATCG00870.1 | Symbols: ORF77.1 | Protein precursor Ycf15, putative, chloroplast | chrC:93495-93728 FORWARD LENGTH=234 Length=234 Score = 390 bits (211), Expect = 2e-108 Identities = 215/217 (99%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75 Query 61 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 135 Query 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195 Query 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217 ||||||||||||||||||||||||||||||||||||| Sbjct 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9701675557 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5