BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493600
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35320.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1279 0.0
> AT5G35320.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:13521779-13523425
FORWARD LENGTH=1073
Length=1073
Score = 1279 bits (692), Expect = 0.0
Identities = 887/977 (91%), Gaps = 30/977 (3%)
Strand=Plus/Plus
Query 1 AGAGAAGCTGAGAAAGACCACTTTTTCTTCTATACATGTCGCTTCTTCTTACTTGTCCAG 60
||||||||||||||| |||| ||||||||||||||||||||||||| || |||| |||||
Sbjct 1 AGAGAAGCTGAGAAATACCAATTTTTCTTCTATACATGTCGCTTCTCCTAACTTCTCCAG 60
Query 61 AATTTTATCATTATCTCTGCTAAAAAGC-TTCACTTGCCGTTGAATAAACGAAGAATGGA 119
|||||||| ||| |||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 61 AATTTTATTATTGTCTCTGCT-CAAAGCTTTCACTTGCCGTTGAACAAACGAAGAATGGA 119
Query 120 GGAGAACGAGCGCTTGTCGATGAAGAGGAAAGATATTGACAGAGTTAACGACGAATTCTC 179
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 120 GGAGAACGAGCGCTTGTCGATGAAGAGGAAAGATATTGACAGAGTAAACGATGACTTCTC 179
Query 180 TGACTTTTCCCTCTCTTCTCCCGCCAGGAAGATTCGTCGTCTGGATGTGGATTTGCCACC 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATTTTTCCCTCTCTTCTCCCGCCAGGAAGATTCGTCGTCTGGATGTGGATTTGCCACC 239
Query 240 GATTATGGAGGAAGAGGAAATTGATTTGCCGATGCAAGATACTGTCGTGGAAGAAATTGA 299
||||||||||||||| || |||||||| |||||||||||||| |||| ||||||||| ||
Sbjct 240 GATTATGGAGGAAGAAGAGATTGATTTACCGATGCAAGATACGGTCGCGGAAGAAATCGA 299
Query 300 GCTTGAGCCGGTGAACGATGAGAGAGCAATTGTTCTATTTAAGCCTCTTCATTATCAGCA 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GCTTGAGCCGGTTAACGATGAGAGAGCAATTGTTCTATTTAAGCCTCTTCATTATCATCA 359
Query 360 GCCTTCTTCTGGAAACCTATTTGTTGATAGAGACTTGATTTCTGGGTTTAAGAATAGATT 419
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 360 GCCTTCTTCTGGAAACGTATTTGTTGATCGACACTTGATTTCTGGGTTTAAGAATAGATT 419
Query 420 TCTTCGCGATGTATCAATAGCTGATGATAATCACTATGAAGATCAGAGATCCAACAAATG 479
||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||
Sbjct 420 TCTTCGCGATGTATCGATAGCTGATGATAATCAGTATGAAGATGAGAGATTAAACAAGTG 479
Query 480 CCAAGCAGTTGTTTGCTGGAATCCTTCTCAGTCTACTTACTCGCAGTCCATAGGAACCTT 539
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 480 TCAAGCTGTTGTTTGCTGGAATCCGTCTCAGTCTACTTACTCACAGTCCATAGGAACCTT 539
Query 540 CCAACAACCGCGTACACTAGAGATTACTGAGTTAGATGAAACAGGTGAGGATGCGGTAAT 599
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 540 CCAACAACCGCGGACACTAGAGATTACTGAGTTGGATGAGACAGGTGAGGATGTGGTAAT 599
Query 600 GGATGAAGCAACCAATGAGATAGAAGAAGATAGTGGAAGTACCAGTCTATCTTTTCCGCA 659
|||||| ||| |||||||||||||||| |||| |||||| |||||||||||||| || ||
Sbjct 600 GGATGATGCATCCAATGAGATAGAAGAGGATACTGGAAGCACCAGTCTATCTTTCCCTCA 659
Query 660 ACAAGGACAGCACCAAGAGC-----C-CACCTATGGTTTTGGCTTGCATCAGTGGCAGCA 713
||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 660 GCAAGGACAGCAGCAAGAGCAAGAGCACACCTATGGTTTTGGCTTGCATCCGTGGCAGCA 719
Query 714 A-CAACAAAACTGTATGATTCCGCAGCTTCCTCAAGTCAGTACTACTCCCGCTCCTGTCA 772
| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 720 AGCG-CAAAACTGTATGATTCCGCAGCTTCCTCAAGTCAGTACTACTCCCACTCCCATCA 778
Query 773 CTTGGTTCCGATGATACGGCTTAAGCATGGGAGACAGGAGCCCACCATCAGCGAATAGGG 832
|||||||||||||||||||||||| || |||| | | | | | | |||||||
Sbjct 779 CTTGGTTCCGATGATACGGCTTAACCACGGGA-A-A--A-C------T--G--AATAGGG 823
Query 833 AATCCACGAAGCAG-AGTAGTAGAAGGCAGATTTGTTGTTAGTTTT-GTTTCTGCCTTTT 890
||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 824 AATGCACGAAGCAGGA-TAGTAGAAGGCAGATTTGTTGTTAGTTTTTGTTTCTGCCTTTT 882
Query 891 GCGCGGATTAGAGATATGGCGTAGTTTTGTTGCTGTATGT--ACCAAACTAATGGCTTCA 948
|||| ||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||
Sbjct 883 GCGCAGATTAGAGATATGGCATAGTTTTGTTGTTGTATGTTTACCAAACTAATAGCTTCA 942
Query 949 GCTATATCTCCCCTAGG 965
|| ||||||||||||||
Sbjct 943 GCCATATCTCCCCTAGG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5