BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493603
Length=2832
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35370.1 | Symbols: | S-locus lectin protein kinase family ... 4228 0.0
> AT5G35370.1 | Symbols: | S-locus lectin protein kinase family
protein | chr5:13588433-13591271 REVERSE LENGTH=2839
Length=2839
Score = 4228 bits (2289), Expect = 0.0
Identities = 2662/2843 (94%), Gaps = 22/2843 (1%)
Strand=Plus/Plus
Query 3 AAAAAACAGACAAGAACTCATTCAGATTCCTCTCTGATGATCCACTTCTTGTAATAATAA 62
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 6 AAAAAA-AAACAAGAACTCATTCAGATTCTTCTCTGATGATCCACTTCTTGTAATAATAA 64
Query 63 C--AAA-ATACAGAGTGGTTTCTCTATGAGATCAACATTTC---AGTTGTTGTTGTCCCT 116
| ||| | |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 65 CAAAAACAAACAGAGTGGTTTCTCTATGAAATCAACGTTTCTGTTGTTGTTGTTGTTACT 124
Query 117 TAGTCTCCTCAATCTTTTCTTTGTCTATGTTTCATGTGCGTCGTCCACAGAGTTTGTTTA 176
||| | ||||||||| ||||||||| |||||||||||| || |||| ||||||||||||
Sbjct 125 TAG--T-CTCAATCTTCTCTTTGTCTTTGTTTCATGTGCTTCTTCCATAGAGTTTGTTTA 181
Query 177 CCCTAACTTCACAGCTTCTAACCTCAGATTCATCGATAGCTCCAAAGGAGCTTTCCTCTT 236
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182 CCCTAATTTCACAGCTTCTAACCTCAGATTCGTCGATAGCTCCAAAGGAGCTTTCCTCTT 241
Query 237 CTCTCGTAATTCCAACTTCAAAGCCGGTTTATTCAGTCCCGGCGGCGATGATTCTTCCTC 296
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 GTCTCGTAATTCCATCTTCAAAGCCGGTTTATTCAGTCCCGGCGGCGATGA---TTCCTC 298
Query 297 TACCGGTTTCTACTTCTCTGTCGTCCATGTCGATTCCGGTTCAACAATCTGGTCATCAAA 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TACCGGTTTCTACTTCTCCGTCGTCCATGTCGATTCCGGTTCAACAATCTGGTCATCAAA 358
Query 357 TCGAGATTCCCCTGTTTCAAGCTCTGGTAAAATGAATCTTACCCCTCAAGGAATCTCTGT 416
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 359 TCGAGATTCCCCTGTTTCAAGCTCTGGTACAATGAATCTTACTCCTCAAGGAATCTCTGT 418
Query 417 TATTGAAGATGGTAAAAGTCAATTACCCGTTTGGTCAACGCCGGTTTTACCCTCTCCGGT 476
|||||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||
Sbjct 419 TATTGAAGATGGTAAAAGTCAAATACCAGTTTGGTCAACGCCGGTTTTAGCTTCTCCGGT 478
Query 477 TCACTCCCTTCGGTTAACCGACGCCGGAAATCTCCTTCTTCTTGATCACTTGAACGTTTC 536
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 TAAGTCCCTTCGGTTAACCGACGCCGGTAATCTCCTTCTTCTTGATCACTTGAACGTTTC 538
Query 537 TCTATGGGAAAGCTTTGACTTTCCCACCGACTCGATCGTTCTTGGACAAAGACTCAAACT 596
|||||||||||||||||| ||||| || |||||||||||||||||||||||||| || ||
Sbjct 539 TCTATGGGAAAGCTTTGATTTTCCTACTGACTCGATCGTTCTTGGACAAAGACTTAAGCT 598
Query 597 TGGGATGTTCTTGTCCGGATCCGTCTCGCGGTCTGATTTCTCTACCGGAGATTATAAGTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGGATGTTCTTGTCCGGATCCGTCTCGCGGTCTGATTTCTCTACCGGAGATTATAAGTT 658
Query 657 CTTGGTCGGTGAATCAGACTGTTTGATGCAGTGGAAAGGACAGAACTATTGGAAGCTAAG 716
||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 659 CTTGGTCGGTGAATCCGACGGTTTGATGCAGTGGAGAGGACAGAATTATTGGAAGCTAAG 718
Query 717 GATGCATACACGAGCTAATGTTGATTCTAATTTCCCTGTTGAATATCTAACGGTCACTAC 776
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 719 GATGCATATACGAGCTAATGTTGATTCTAACTTCCCTGTTGAGTATCTAACGGTCACTAC 778
Query 777 TTCTGGATTAGCTCTTATGGGACGGAACGGGACGGTGGTTGTAGTCCGTGTGGCTCTACC 836
||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct 779 TTCAGGATTAGCTCTTATGGCACGGAACGGGACGGTGGTTGTAGTCCGCGTGGCTTTACC 838
Query 837 ACCGTCGTCTGATTTCAGAGTGGCGAAGATGGATTCATCTGGTAAATTCATCGTTAGTAG 896
|||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 839 ACCGTCCTCTGATTTCCGAGTGGCGAAGATGGATTCATCAGGTAAGTTCATCGTTAGTAG 898
Query 897 ATTCTCCGGGAAGAATCTTGTGCCGGAATTCTCTGGTCCTATGGATTCCTGTCAGATTCC 956
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 899 ATTCTCCGGGAAGAATCTTGTGACGGAATTCTCTGGTCCTATGGATTCTTGTCAGATTCC 958
Query 957 GTTTGTCTGCGGTAAGCTCGGGCTTTGTCATCTTGATAATGCTTCGGAAAATCAGAGTTG 1016
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 959 GTTTGTCTGCGGTAAGCTCGGGCTTTGTAATCTTGATAACGCTTCGGAAAATCAGAGCTG 1018
Query 1017 TTCATGTCCAGATGAGATGCGGTTGGATGCGGGTAAGGGAGTATGTGTTCCGGTTAACCA 1076
||||||||||||||||||||| ||||||| |||||||| || ||||||||||||| |||
Sbjct 1019 TTCATGTCCAGATGAGATGCGAATGGATGCTGGTAAGGGTGTGTGTGTTCCGGTTAGCCA 1078
Query 1077 ATCATTGAGTTTACCGGTTTCTTGTGAAGCAAGAAACATTACGTATCTCGAACTCGGCCT 1136
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 1079 ATCATTGAGTTTACCTGTTTCTTGTGAAGCAAGAAACATTTCGTATCTCGAACTAGGTCT 1138
Query 1137 TGGTGTGTCTTACTTCTCTACTCAATTCACTGATCCTGTGGAACACGATCTCCCGTTATC 1196
|||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 1139 TGGTGTGTCTTACTTCTCTACTCATTTCACCGATCCTGTGGAACACGGTCTCCCGTTATT 1198
Query 1197 GGCTTGTCATGATCTCTGCAGTAAGAATTGCTCCTGCCTCGGTGTTTTCTATGAGAACAC 1256
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1199 GGCTTGTCATGATATTTGCAGTAAGAATTGCTCTTGCCTCGGTGTTTTCTATGAGAACAC 1258
Query 1257 ATCTCGGTCTTGTTATCTGGTTAAGGACTCGTTTGGTTCTTTGTCTCTAGTAAAAAACTC 1316
||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||
Sbjct 1259 GTCTCGGTCTTGTTATCTCGTAAAGGACTCGTTTGGTTCTTTGTCTTTAGTAAAGAACTC 1318
Query 1317 ACCAGACAATCATGATCTTATTGGATACGTTAAGTTGTCTATCAG-AAAACAAATCGCTC 1375
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1319 ACCAGAGAATCATGATCTTATTGGATACGTTAAGTTGTCTATCAGAAAAACAAA-CGCTC 1377
Query 1376 AACCCT-CGGTAAACAATAAC--A-GAGGATCTAGTTTTCCTTTGATCGCACTTGTGCTC 1431
| ||| ||| |||||||||| | |||||||||| || ||| |||||||||||||||||
Sbjct 1378 -AGCCTCCGGGAAACAATAACAGAGGAGGATCTAGCTTCCCTGTGATCGCACTTGTGCTC 1436
Query 1432 TTACCTTGCTCTGGTTTCTTTCTTCTGATTGCACTAGGGCTTCTCTGGTGGAGAAGATGT 1491
|||||||||||||||||||| ||| |||||||| ||||||||||||||||| | ||||||
Sbjct 1437 TTACCTTGCTCTGGTTTCTTCCTTTTGATTGCATTAGGGCTTCTCTGGTGGCGTAGATGT 1496
Query 1492 GCAGTGATGAGATACAGCAGCATCCGTGAGAAGCAAGTAACAAGACCTGGGTCTTTCGGA 1551
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| |
Sbjct 1497 GCAGTGATGAGATACAGTAGCATCCGTGAGAAGCAAGTAACTAGACCCGGGTCGTTCGAA 1556
Query 1552 TCAGGAGATCTAGGATCTTTCCATATCCCGGGGTTACCTCAGAAATTCGAGTACGAAGAG 1611
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1557 TCAGGAGATCTAGGATCTTTCCATATCCCGGGGTTACCTCAGAAATTCGAATTCGAGGAG 1616
Query 1612 CTAGAACAAGCGACCGAGAATTTCAAGCTGCTGATAGGATCAGGCGGATTTGGCTCAGTC 1671
|| |||||||| || |||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 1617 CTGGAACAAGCAACTGAGAATTTCAAGATGCAGATAGGATCAGGCGGATTTGGATCAGTC 1676
Query 1672 TACAAAGGAACTCTCCCGGACGAAACACTCATCGCGGTCAAGAAAATCACAAACCATGGG 1731
||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 1677 TACAAAGGAACTCTCCCAGATGAAACACTCATTGCTGTCAAGAAAATCACAAACCATGGA 1736
Query 1732 CTTCACGGTAGACAGGAGTTTTGCACGGAAATCGCGATAATTGGAAATATCCGACACACG 1791
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1737 CTTCACGGTAGACAAGAGTTTTGTACGGAAATCGCGATAATTGGAAATATCAGACACACG 1796
Query 1792 AATCTAGTGAAACTCCGAGGCTTTTGCGCTCGTGGGAGGCAGTTACTCTTAGTCTACGAG 1851
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1797 AATCTAGTGAAACTGCGAGGCTTTTGCGCTCGCGGGAGGCAGTTACTCTTAGTCTACGAG 1856
Query 1852 TACATGAACCATGGATCGTTAGAAAAGACTCTGTTTAGTGGGAATGGTCCGGTGCTTGAG 1911
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TACATGAACCATGGCTCGTTAGAAAAGACTCTGTTTAGTGGGAATGGTCCGGTGCTTGAG 1916
Query 1912 TGGCAAGAAAGGTTTGATATAGCGCTCGGGACAGCTCGTGGACTCGCGTATCTCCACAGT 1971
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1917 TGGCAAGAAAGGTTTGATATAGCGCTCGGGACTGCTCGCGGGCTCGCGTATCTCCACAGT 1976
Query 1972 GGATGCGACCAGAAGATCATACACTGCGATGTGAAGCCAGAGAACATCTTACTGCACGAT 2031
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 GGTTGCGACCAGAAGATCATACACTGCGATGTGAAGCCAGAGAACATCTTACTGCACGAT 2036
Query 2032 CATTTCCAACCGAAGATATCTGATTTCGGGTTATCAAAGCTTCTAAATCAAGAAGAGTCA 2091
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2037 CATTTCCAACCTAAGATATCTGATTTCGGGTTATCAAAGCTTCTTAATCAAGAAGAATCA 2096
Query 2092 AGTCTGTTCACGACAATGAGAGGTACTCGAGGCTATTTAGCACCAGAGTGGATAACAAAC 2151
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2097 AGTCTGTTCACTACGATGAGAGGTACTCGAGGCTATTTAGCTCCAGAGTGGATAACAAAC 2156
Query 2152 GCAGCTATCTCTGAGAAAGCTGATGTGTACAGCTATGGAATGGTTTTGTTAGAGCTAGTG 2211
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2157 GCAGCGATCTCCGAGAAAGCTGATGTGTACAGCTATGGAATGGTTTTGTTAGAACTAGTG 2216
Query 2212 AGTGGTCGGAAAAATTGCTCGTTCCGATCTCGGAGCAACAGTGTGACGGAGGAGAATAAT 2271
|||||| ||||||| || || || ||||||||||||||||||||||||||||| ||||||
Sbjct 2217 AGTGGTAGGAAAAACTGTTCTTTTCGATCTCGGAGCAACAGTGTGACGGAGGATAATAAT 2276
Query 2272 CAAAACCACTCGTCGACTACGACCACTAGTACTGGTTTGGTATATTTCCCATTGTACGCT 2331
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2277 CAGAACCACTCGTCGACTACGACCACTAGTACTGGTTTGGTGTATTTCCCATTGTACGCT 2336
Query 2332 TTGGATATGCATGAACAAGGCAGGTATATGGAGCTGGCTGATCCGAGGCTAGAGGGTCGG 2391
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2337 TTGGATATGCATGAACAAGGGAGGTATATGGAGCTCGCTGATCCGAGGCTAGAGGGTCGG 2396
Query 2392 GTAACAAGCCAAGAGGCTGAGAAGTTGGTTCGGATAGCTTTGTGTTGCGTCCACGAGGAG 2451
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 GTAACGAGCCAAGAGGCTGAGAAGTTGGTTCGGATAGCTTTGTGTTGCGTCCACGAGGAG 2456
Query 2452 CCAGCGTTGAGGCCGACTATGGCAGCGGTAGTGGGGATGTTCGAAGGAAGCATACCGTTG 2511
||||| |||||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2457 CCAGCATTGAGGCCAACAATGGCAGCGGTAGTGGGTATGTTCGAAGGAAGTATACCGTTG 2516
Query 2512 GGGAATCCGAGAATGGAGTCTTTGAATTTCTTGAGGTTTTATGGGCTGAGGTTTGCAGAG 2571
||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 2517 GGGAACCCGAGGATGGAGTCGTTGAACTTCTTGAGGTTTTATGGGCTGAGGTTTGCGGAG 2576
Query 2572 TCTTCCATGGTTGAGGGGCAAAATGGGGAGAGTGAAACTATGGTCTTCCACCGGCGAGAG 2631
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 TCTTCCATGGTTGAAGGACAAAATGGGGAGAGTGAAACTATGGTCTTCCACCGGCGAGAG 2636
Query 2632 AGCTCTAATAGCGGCGGCTCTAGGCAGTCCGCATCTTACATAGCGTCTCAGGAAGTGTCT 2691
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2637 AGCTCTAATAGTGGCGGCTCTAGGCAGTCTGCGTCTTACATAGCGTCTCAGGAAGTGTCC 2696
Query 2692 GGCCCGCGATGAGATTGCCTAAACGTGAAttttttttgttttttgttttatttgtttttg 2751
||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||||
Sbjct 2697 GGCCCGCGATGAGATCACCTAAATGTGAATTATTTTTGTCTTTTGTTTTATTTGGTTTTG 2756
Query 2752 GTTACTTTGTTAATAGTGATAGGCCTTGTTCATATAATCT--ACTATATATGAAAATTAT 2809
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2757 GTTACTTTGTTAATAGTGATAGGCCTTGTTCATATAATCTCTACTATATATGAAAATTAT 2816
Query 2810 TGGATAATGTTGACATAGAGACT 2832
|| | ||| ||||||||||||||
Sbjct 2817 TGAAAAATCTTGACATAGAGACT 2839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140718275115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5