BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493617 Length=2769 Score E Sequences producing significant alignments: (Bits) Value AT5G35560.1 | Symbols: | DENN (AEX-3) domain-containing protei... 4272 0.0 > AT5G35560.1 | Symbols: | DENN (AEX-3) domain-containing protein | chr5:13742109-13748312 REVERSE LENGTH=2923 Length=2923 Score = 4272 bits (2313), Expect = 0.0 Identities = 2636/2788 (95%), Gaps = 38/2788 (1%) Strand=Plus/Plus Query 1 agaagaagaaga-a-ga-tattat---gaagaagaaaaaagaaaCTGACCCTCTCTTCGT 54 |||||||||||| | | |||||| ||||||||||||||||||||||| ||||||||| Sbjct 13 AGAAGAAGAAGATATTATTATTATGAAGAAGAAGAAAAAAGAAACTGACCATCTCTTCGT 72 Query 55 CTCTTTGTCTCTCGCTCGCTCGCAGCCTTCTTATTATTTTCTCTTAACTTTTTTGAACCC 114 ||||||||||||| ||||||||||||| | || |||||| ||| ||||||||||||||| Sbjct 73 CTCTTTGTCTCTCTCTCGCTCGCAGCC-T-TT-TTATTTCCTC-AAACTTTTTTGAACCC 128 Query 115 ACGAGGATCATCTTTCTCATCATCAC--CATCATCTTCCTCCTCCTCCATAATAATAAAC 172 |||||||||||||| ||||||||||| || ||||||| || |||||||||||||||| | Sbjct 129 ACGAGGATCATCTTCCTCATCATCACATCACCATCTTCTTCGTCCTCCATAATAATAATC 188 Query 173 AAACTTCTTCT--TTT-CTCTGAAGAAGAAACTAG-GTCACCAGTTTTTTCAATTGCTTG 228 |||||||||| ||| || ||| | ||| ||| || ||||||||||||||| Sbjct 189 -AACTTCTTCTCCTTTATTC-CAAGTTCCGATTAGTTTCA-GAG-TTTTTCAATTGCTTG 244 Query 229 CTTTAAG-TT-TTTGCGTAGGTG-TGAAGTAAGTTATGGCCAAGAATGAGGAAGGAAGTA 285 | ||||| || |||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct 245 C-TTAAGTTTCTTTGCGTA-GTGTTG-AGTAAGTTATGGCCAAGAATGAGGAAGGAAGTA 301 Query 286 GTAGTCCGAGTTGGGGTGCTTCGTTTTTTATGCAGACTTCAGAAGATGTTGCAATGGCTT 345 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 302 GTAGTCCGAGCTGGGGTGCTTCGTTTTTCATGCAGACTTCAGAAGATGTTGCAATGGCTT 361 Query 346 TTGCTGCTGCGGCTTCTGCGATAAACCCGCCAAGGCCTTCTGTTGTCTTTTCGTCGAAAG 405 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 362 TTGCTGCTGCGGCTTCTGCGATAAACCCGCCAAGGCCGTCTGTTGTCTTTTCGTCGAAAG 421 Query 406 ATGAAGGTAGTGATAGCCCTCTGGAGAGGTTACAGAGGCAGGTGTCTAAAGCGGTTAAAA 465 |||||||||| ||||| ||| |||||||||||||||||||||| || ||||||||||| | Sbjct 422 ATGAAGGTAGCGATAGTCCTTTGGAGAGGTTACAGAGGCAGGTTTCGAAAGCGGTTAAGA 481 Query 466 ACTTCTATGAAAATCCTAAGACGAAGAATGTAATGTATAATCCTGAGGTTTTGACTAGCC 525 |||||||||||| ||||||||| |||| |||| |||| |||||||||||||||||||||| Sbjct 482 ACTTCTATGAAACTCCTAAGACCAAGAGTGTATTGTACAATCCTGAGGTTTTGACTAGCC 541 Query 526 AAAAGCGTCAATGGGCGAAATTTCAGGATCATAAACCATTGAAAGATCCATCAAGGCTTT 585 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 542 AAAAGCGTCAATGGGCGAAATTTCAGGATCATAAACCATTAAAAGATCCATCAAGGCTTT 601 Query 586 TTGAAAGCGTTGTTGTTGTTGGACTTCATCCTAATTGTGATATCCAAGCACTTGAGAGGC 645 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 602 TTGAAAGCGTTGTTGTGGTTGGACTTCATCCTAATTGTGATATTCAAGCACTTGAGAGGC 661 Query 646 AGTACATTGCACGAAAATCTGAAGGCTCTTCTGGG-AGATTGCGAAGTGCACTGGTTTCT 704 |||||||||| |||||||||||||||||||| ||| |||||||||||||| || || ||| Sbjct 662 AGTACATTGCTCGAAAATCTGAAGGCTCTTC-GGGAAGATTGCGAAGTGCTCTTGTCTCT 720 Query 705 CAAATTCATTCCCGTGTAGAACCCAGTCTCGAACCACAGGTCTTACTTGTGTACCCTCCC 764 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CAAAATCATTCCCGTGTAGAACCCAGTCTCGAACCACAGGTCTTACTTGTGTACCCTCCC 780 Query 765 GATAAGCAGCCTCCAATTAAGTACAAGGATCTTCATTCATTTTGCTTTCCTGGAGGCATT 824 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 781 GATAAGCAGCCTCCAATTAAATACAAGGATCTTCATTCATTTTGCTTTCCTGGAGGCATT 840 Query 825 GAGGTCCATGCTGTTGAGAGAACTCCTTCCATGAGCGAGTTGAGTGAGATTATTCTCAGT 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GAGGTCCATGCTGTTGAGAGAACTCCTTCCATGAGCGAGTTGAGTGAGATTATTCTCAGT 900 Query 885 CAGGAACATCTGAGACCAAGTGACCTTTCATTTGTATTTAGGTTACAGGTTGCTGATAAT 944 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CAGGAACATCTTAGACCAAGTGACCTTTCATTTGTATTTAGGTTACAGGTTGCTGATAAT 960 Query 945 TCTACTTTGTATGGATGTTGCTTACTAGTGGAAGAAATAGTGAACAAACCGTCCAGATTG 1004 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TCTACTTTGTATGGATGCTGCTTACTAGTGGAAGAAATAGTGAACAAACCGTCCAGATTG 1020 Query 1005 CTTTCCACAGTTTTGGACAAACAACCTGCTTGCTCATCATTAAGTCGCTATGTTATGACA 1064 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CTTTCCACGGTTTTGGACAAACAACCTGCTTGCTCATCATTAAGTCGCTATGTTATGACA 1080 Query 1065 ACTCGCAGATGCTATTGCATCCTTACCAGACTGCCGTTTTTTGAATTGCATTTTGGTGTA 1124 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 ACTCGCAGATGCTATTGCGTCCTTACCAGACTGCCGTTTTTTGAATTGCATTTTGGTGTA 1140 Query 1125 TTAAATAGCATCTTCTTGGAAGAAAGACTGGAGCATTTGATGAGTGGCATCAGTTGTGCA 1184 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1141 TTAAATAGCATCTTCTTGGAAGAAAGACTAGAGCATTTGATGAGTGGCATCAGTTGTGCG 1200 Query 1185 TCTTTAGAACCCCCAACAGATTTCAGCAATGTAGATAGCTTAAATGATTCATCACCCCAA 1244 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1201 TCTTTAGAACCCCCAACAGATTTCAGCAATGAAGATAGCTTAAATGATTCATCACCCCAA 1260 Query 1245 CAAAGAGACTCTGGGAACACAAAAGAACAAACTGTTGAAGCAGGTTC-AGAACTCCCTAA 1303 ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1261 CAAAGAGACTCTGGGGACACAAAAGAACAAACTGTTGAAGCAGGTTCCA-AACTCCCTAA 1319 Query 1304 AGCTGACGAAATTTCAGAAAATGGGACTTGTGAGGCGAATCAGAAAGTTGACGACTCTGC 1363 |||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||| Sbjct 1320 AGCTGACGAAATTTCAGATAATGGGACTTGTGAGGCTAATCAGAAAGCTGATGACTCTGC 1379 Query 1364 AGAGTCTAACGACTATGTCCCCAAAGCTGATGATTCCTTACCAATTATTAAGCAAGGCAG 1423 |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1380 AGAGTCTATTGACCGTGTCACCAAAGCTGATGATTCCTTACCAATTATTAAGCAAGGCAG 1439 Query 1424 AGAAAGTTGTTTACCAGATCCTGGCCCCCTTCTTCGGTGCCCGTATTTGGATGAGATCTC 1483 |||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||| Sbjct 1440 AGAAAGTTGTTTACCAGAGCCTGGCCCCCTTCTTCGGTGTCCTTATCTGGATGAGATCTC 1499 Query 1484 TGATTCTAGCACTAGCTTTCAGGCTGCTCCTTGTGAGAGGAGGCATTCTAGGACCAGTGC 1543 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1500 TGATTCTAGCACTAGCTTTCAGGCTGCTCCATGTGAGAGGAGGCATTCTAGGACCAGTGC 1559 Query 1544 AGATGATACTGAGACAGATGAAGCATCCTTTTCTGGTCAAGATGATACAAGCAGTAATTT 1603 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1560 AGATGATACTGAGACAGATGAAGCATCCTTTTCTGGTCAAGATGATACAAGTAGTAATTT 1619 Query 1604 TGATATTCTTGAGTGGGCAAAGTCCaaaaaaaaTGGGTCGCTGCAAATACTATGTGAGTA 1663 |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1620 TGATATCCTTGAGTGGGCAAAGTCCAAAAAAAATGGGTCGTTGCAAATATTATGTGAGTA 1679 Query 1664 TTACCAATTAAAATGCCCAGCAAGAGGTTCAACTATTACATTTCATCCTTTGGAGCATCT 1723 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 TTACCAATTAAAATGCCCGGCAAGAGGTTCAACTATTACATTTCATCCTTTGGAGCATCT 1739 Query 1724 TCATCCGGTTGAATATCATAGACCTGATGAAGTGGCATTGCATACTCCTGGATCAGCAAT 1783 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1740 TCATCCGGTTGAATATCATAGACCTAATGAAGTGGCATTGCATACTCCTGGATCAGCAAT 1799 Query 1784 TGACCGAAGATCATGCAGCACTAGTCTAGAACTCGTGGAGGCACACACTGCGCTCATGGC 1843 ||| | ||||||||||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 1800 TGATCTAAGATCATGCAGCACTAGTCTAGAACTCGCGGAGGCACACACAACACTCATGGC 1859 Query 1844 TGAGGAAGAAGCAGCTGCACTATCAACATGGGCTGTTGCTTCGTTATGTGGATCACTGCG 1903 ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| Sbjct 1860 TGAGGAAGAAGCAGCTGCATTATCAACATGGGCTGTTGCCTCCTTATGTGGATCACTGCG 1919 Query 1904 GCTTGACAATGTCTTGATGATCCTAGCAGGAGCACTGCTTGAGAAACAGATTGTATTTGT 1963 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1920 GCTTGACAATGTCTTGATGATACTAGCAGGAGCACTGCTTGAGAAACAGATTGTATTTGT 1979 Query 1964 TTGCTCTAATTTGGGAATCTTAGCAGCATCAGTTCTATCAATTATCCCAGTAATCCGTCC 2023 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1980 TTGCTCTAATTTGGGAATCTTAGCAGCATCAGTTTTATCAATTATCCCAGTAATCCGTCC 2039 Query 2024 CTTTCGGTGGCAGAGCCTTTTAATGCCGGTATTGCCAGATGATATGCTAGAATTTTTGGA 2083 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 2040 CTTTCGGTGGCAGAGCCTTTTAATGCCGGTTTTGCCAGATGATATGCTGGAATTTTTGGA 2099 Query 2084 TGCCCCAGTCCCGTACATAGTTGGGGTAAAGAACAAAACAAGTGAAGTTCAGTCGAAACT 2143 |||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 2100 TGCCCCAGTCCCTTACATAGTTGGGGTGAAGAACAAAACTAGCGAAGTTCAGTCGAAACT 2159 Query 2144 AACAAATGTTATCGTAGTGGATGTTTTTAAGAACCAGGTTAAGTCACCAAGTATGCCTCA 2203 ||||||||||||||| |||||| || | ||||||||||||||||||||||||||||| || Sbjct 2160 AACAAATGTTATCGTCGTGGATATTCTAAAGAACCAGGTTAAGTCACCAAGTATGCCCCA 2219 Query 2204 GCTGCCTCAGTATCGAGACTTATATAATGCGCTAAGTCCTTATCACTCAAAGCTCGTTGG 2263 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2220 GCTGCCTCAGTATCGAGACTTATATAATGCGCTAAGTCCTTATCACTCAAAGCTCGTCGG 2279 Query 2264 AGAAAGCTATCTAGCAAAGAAAAGACCAGTATATGAATGTACTGATGTGCAGGTGGATGC 2323 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2280 AGAAAGCTACCTAGCAAAGAAAAGACCAGTGTATGAATGTACTGATGTGCAGGTGGATGC 2339 Query 2324 TGCAAAAGGCTTCCTGGATGTCCTAAGGTCGTACCTTGATTCTCTTTGCTCTAGTCTGCA 2383 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2340 TGCAAAAGGCTTCATGGATGTCCTAAGGTCGTACCTTGATTCTCTTTGCTCTAATCTGCA 2399 Query 2384 GTCACACACCATAACAAATGTGCAATCCAACAACGATAAGGTATCACTTCTCCTAAAGGA 2443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2400 GTCACACACCATAACAAATGTGCAATCCAACAACGATAAGGTATCACTTCTCCTAAAGGA 2459 Query 2444 AAGTTTCATTGACTCCTTTCCTAGTCGTCAGCGCCCGTTCATGAAGCTATTCGTGGATAC 2503 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2460 AAGTTTCATCGACTCCTTTCCCAGTCGTCAGCGCCCGTTCATGAAGCTATTTGTGGATAC 2519 Query 2504 ACAACTCTTCTCTGTACATACAGATCTCGTTCTTTCCTTCATTCAGAAGCTATAGGATAA 2563 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | Sbjct 2520 ACAACTCTTCTCTGTACATACAGATCTCGTTCTTTCCTTTATCCAGAAGCTATAGGATGA 2579 Query 2564 CTACATGTATACGTAAAACAAGTCTTGTTGGTGGGAACAGAACACAATACCCCGCGATAA 2623 ||||||||||||||||||||||||||| |||||| || | ||||||||| |||||| | Sbjct 2580 CTACATGTATACGTAAAACAAGTCTTGGTGGTGG-AA-A---CACAATACCTCGCGATGA 2634 Query 2624 AAGTGCCATCGATTCTGTATTTGTAACTTACTGTTTGAGAAAATTGTCTATGGAAAAA-- 2681 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2635 AAGTGCCATCGATTCTGTATTTGTAACTTACTGTTTGAGAATGTTGTCTATGGAAAAAAA 2694 Query 2682 GACTTCCATAGATGAGGATTTGATACAGAGAACCATCATCTCCTTTGTATCCTTCAAACA 2741 ||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||| | Sbjct 2695 GACTTCCATAGATGAGGGTTTGATACAGAGAACCATCATTTC-TTTGTATCCTCCAACCG 2753 Query 2742 CAAACACAGTTGGTGTTTTAACTCTTAA 2769 |||||||||||||||||||||||||||| Sbjct 2754 CAAACACAGTTGGTGTTTTAACTCTTAA 2781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 137557757706 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5