BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493662
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36250.1 | Symbols: | Protein phosphatase 2C family protein... 2645 0.0
> AT5G36250.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:14282103-14284581 FORWARD LENGTH=2039
Length=2039
Score = 2645 bits (1432), Expect = 0.0
Identities = 1642/1742 (94%), Gaps = 19/1742 (1%)
Strand=Plus/Plus
Query 183 CCCTC-AATGTCTCTCTC-ATTCTTCTCCA-GAGCTATAAAGTCGATTCCTTTATCACCC 239
||||| || ||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 265 CCCTCTAA-GTCTCTC-CAATTCTTCTCCATTAGCTATAAAGTCGATTCCTTTATCACCG 322
Query 240 TTGTGAAGAATTTGGTCGAAAGTTTTGGCCTTTAGCACCCAATTTTCAATCCTGGCGATA 299
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 323 TTCTGAAGAATTTGGTCGAAAGTTTTGGCCTTTAGTACCCAATTTTCAATCCTGGCGATA 382
Query 300 ACTGAATTGAAAAGGGTTCCAAAAGGTCCATCACCTGAAAACAATA--G-TTTTGATTGT 356
||||||||||||||||||||||||| | |||||||||||||||| | | ||||||||||
Sbjct 383 ACTGAATTGAAAAGGGTTCCAAAAGTTACATCACCTGAAAACAACAGTGCTTTTGATTGT 442
Query 357 GTTGGTGGTTTGGAGTGCTTGATAAGTTTAATCAGGGCCCTTGATATGGGGTCCTGCTTA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GTTGGTGGTTTGGAGTGCTTGATAAGTTTAATCAGGGCCCTTGATATGGGGTCCTGCTTA 502
Query 417 TCATCATCTGGA---GGAGGAAGTAGGAGATCTCTTCATGGTTCTCCTCATGTTCCTGGA 473
|||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 503 TCATCATCTGGAGGTGGAGGAAGCAGGAGATCTCTCCATGGCTCTCCTCATGTTCCTGGT 562
Query 474 CCTGGTAGGAGGAAGAGGCCTCCCAAGAGGAGACCTGGGTCTTGTAGTTCTTCCTTCGAT 533
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 563 CCTGGGAGGAGGAAGAGGCCTCCCAAGAGGAGACCTGGGTCTTGTAGTTCTTCGTTTGAT 622
Query 534 AACACCGAGGAGCCACTTCTTCATAGGATCCCTGGAAGGATGTTCTTGAATGGCTCTACC 593
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 623 AACACCGAGGAGCCACTTCTTCATAGGATCCCTGGAAGGATGTTTTTGAATGGCTCTACA 682
Query 594 GACACCGCCTCTCTTTTCTCTCAACAGGGCAAGAAAGGACCTAATCAGGATGCCATGATT 653
||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 683 GACACCGTGTCTCTCTTCTCTCAACAGGGCAAGAAAGGACCTAATCAGGACGCTATGATT 742
Query 654 GTCTGGGAGAATTTTGGGTCTATGGCGGACACTGTTTTTTGTGGTGTTTTTGATGGTCAT 713
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 743 GTTTGGGAGAATTTTGGGTCTATGGAGGACACTGTGTTTTGTGGTGTTTTTGATGGTCAT 802
Query 714 GGTCCGTATGGTCACATTGTTGCAAAGAGAGTGAGGGATTTGCTTCCACTCAAGTTAGGT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GGTCCGTATGGTCACATTGTTGCAAAGAGAGTGAGGGATTTGCTTCCACTCAAGTTAGGT 862
Query 774 TCTCACTTGGAGTCATATGTGTCCCCTGAGGAGGTTCTTAAAGAGATTAGCCTCAACACC 833
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 863 TCTCATTTGGAGTCCTATGTGTCCCCTGAGGAGGTTCTTAAAGAGATTAGCCTTAACACT 922
Query 834 GGTGATAGAAAGATCTCAGAAGACCTTGTGCATATATCTGCCAATGGAGAATCACGAGTC 893
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 923 GATGATAGAAAGATCTCAGAAGACCTTGTACATATATCTGCCAATGGAGAATCACGAGTC 982
Query 894 TACAATAAGAATTACGTAAAGGATCAGGATATGATTGAAAA-CTTAATAGGCTCAATTGT 952
||||||||| |||| || |||||||| ||||||||| ||| || |||||||||||||||
Sbjct 983 TACAATAAGGATTATGTGAAGGATCAAGATATGATTCAAATGCT-AATAGGCTCAATTGT 1041
Query 953 TAAAGCCTATAGATTTATGGATAAGGAGTTGAAGATGCAAGTGGATGTTGATTGTTTTTG 1012
||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1042 TAAAGCCTACAGATTCATGGATAAGGAATTGAAGATGCAAGTTGATGTTGATTGTTTTTG 1101
Query 1013 CAGTGGAACAACTGCAGTTACTATGGTCAAGCAGGGTCAACATCTTGTTATCGGTAATAT 1072
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1102 CAGTGGAACAACTGCAGTTACCATGGTTAAGCAGGGTCAACATCTTGTTATCGGGAATAT 1161
Query 1073 TGGGGATTCAAGAGCAGTATTGGGTATGAGGAACAAAGACAATAAACTTGTTCCTTTTCA 1132
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1162 CGGGGATTCAAGAGCAGTATTGGGTGTGAGGAACAAAGACAATAAACTTGTTCCTTTTCA 1221
Query 1133 ATTAACTGAAGATCTCAAACCAGATGTTCCAGCGGAAGCAGAAAGGATAAAGAGATGCAG 1192
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1222 ATTAACTGAAGATCTCAAACCAGATGTTCCAGCTGAAGCAGAAAGGATAAAGAGATGCAG 1281
Query 1193 AGGACGTATATTTGCTCTTCGAGATGAACCAGGAGTTGCTCGTCTGTGGCTTCCTAACCA 1252
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1282 AGGACGTATATTTGCTCTTCGAGATGAACCGGGAGTTGCCCGTCTGTGGCTTCCTAACCA 1341
Query 1253 CAACTCACCTGGTTTAGCCATGGCACGTGCTTTTGGAGATTTTTGCCTCAAAGACTTCGG 1312
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CAACTCACCTGGTCTAGCCATGGCACGTGCTTTTGGAGATTTTTGCCTCAAAGACTTCGG 1401
Query 1313 TCTCATTTCTGTACCTGACGTGTCCTACCGACGCCTCTCTGAGAAGGATGAATTTGTTGT 1372
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1402 TCTAATTTCTGTACCTGACGTCTCCTACCGACGCCTCACTGAGAAGGATGAATTTGTTGT 1461
Query 1373 CTTGGCAACTGATGGGATTTGGGATGTATTGACGAATGAAGAGGTAGTAGAGATAGTAGC 1432
|||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 1462 CTTGGCAACTGATGGGATTTGGGATGCATTGACGAATGAAGAGGTTGTAAAGATAGTAGC 1521
Query 1433 CAAAGCCCCAACACGTTCCTCAGCAGGTCGAGCCTTGGTGGAGGCTGCAGTGCGGAATTG 1492
||||| ||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1522 GAAAGCTCCAACGCGTTCCTCAGCAGGTCGAGCATTGGTGGAGGCTGCAGTGCGTAACTG 1581
Query 1493 GAGATGGAAGTTCCCAACTTCAAAAGTCGATGACTGTGCCGTAGTTTGCCTCTTCCTTGA 1552
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1582 GAGATGGAAGTTCCCGACTTCAAAAGTCGATGACTGTGCCGTAGTTTGCCTATTCCTTGA 1641
Query 1553 CTCCGAACCGAACAGATTGTCAACTGCTTCTTTCTCAAAGGAAAAACACATCAACAATGG 1612
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1642 CTCCGAACCAAACAGATTGTCAACTGCTTCTTTCTCAAAAGAAAAACACATCAACAATGG 1701
Query 1613 TGTTACTGAACCGGAACCAGACACAGCATCATCATCATCTCCAGACTCAGGAACCGAATC 1672
||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1702 CGTTACTGAACCTGAACCAGACACAGCATCATCATCAACTCCAGACTCAGGAACCGGATC 1761
Query 1673 GCCTGAGCTCAATGGAGTCAACAGAATCGACACACTTGTGAATCTCCCAGTATATGTCCC 1732
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1762 GCCTGAGCTCAATGGAGTCAACAGAATCGATACACTTGTGAATCTCCCAGTATATGTCCC 1821
Query 1733 AACCAAAGAGTAGGAAACATAGAACAGATGC-AGGAGCTCAATGTCTCCTATGCTCAATG 1791
|||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||
Sbjct 1822 AACCAAAGAGTAGGAAG-ATAGAACAGA-GCCAGGAGCTCAATGTCTCCTATGCTCTATG 1879
Query 1792 TTTCTGTCAACAGTTACTGTTTTGGTCATTTACCTCGGTTAAA-TTACTGTTACACGCCC 1850
||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1880 TTTCTATCAACAGTTACTGTTTTGGTCATTTACCTCGGGTAAAATTACTGTTACACGCCC 1939
Query 1851 G--CTTGTGTGTGGCTGATTGTATATATCTTCTCTTCCAATTCATTGTAATACTTTTTCT 1908
| || ||||||| || |||||||||||||||| || ||| |||||||||||||||| ||
Sbjct 1940 GTGCTCGTGTGTGACTCATTGTATATATCTTCTTTTTCAAATCATTGTAATACTTTTGCT 1999
Query 1909 AC 1910
||
Sbjct 2000 AC 2001
Score = 254 bits (137), Expect = 3e-66
Identities = 176/192 (92%), Gaps = 14/192 (7%)
Strand=Plus/Plus
Query 1 TTCCTTCCCTTTGGATCCGATTCTATCTCCACCTTCAAG--CAATATTCGACTCGGTAct 58
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 45 TTCCTTCCTTTTGGATCCGATTCTATCTCCACCTTCAAGCACAATATTCGACTCGGTA-- 102
Query 59 ctctctctctctcttcttctTATTGCAAAAAGATTCTCTTTTTATCAGTTTTGTGGAT-- 116
|||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 103 CTCTCTCT-T-TCTTCTTCTTATTGCAAAAAGATTCTCTTTTTATCTGTTTTGTGGATAT 160
Query 117 -GAGATTCTGGATAAAA-CAATCATCTTTTT-CTC--AAAAATCTCTGCTTAAGAACTGG 171
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 161 AGAGATTCTGGATAAAAACAATCATCTTTTTTCTCTCAAAAATCTCTGCTTAAGAACTGG 220
Query 172 GATTCTT-AAAA 182
||||||| ||||
Sbjct 221 GATTCTTCAAAA 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95732439315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5