BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493689
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37260.1 | Symbols: RVE2, CIR1 | Homeodomain-like superfamil... 1432 0.0
> AT5G37260.1 | Symbols: RVE2, CIR1 | Homeodomain-like superfamily
protein | chr5:14751344-14753088 REVERSE LENGTH=980
Length=980
Score = 1432 bits (775), Expect = 0.0
Identities = 922/990 (93%), Gaps = 22/990 (2%)
Strand=Plus/Plus
Query 1 ATAAACAACAACTCTCTTACCAATCTC-AAAC-ATt-tctctctctttattcttcttctt 57
||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 1 ATAAACAACAACTCTCTCACCAATCTCAAAACAATTCTCTCTCTCTTTATTCTTCTTCTT 60
Query 58 caacatcagatttcagatcttaaatcttcaag---tcttcttcttcttctGCGACCATGG 114
|| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 61 CAGCTTCAGATTTCAGATCTTAAATCTTCAAGTCTTCTTCTTCTTCTTCTGCAACCATGG 120
Query 115 CTATGCAGGAACGTTGTGAGAGTTTATG---TGATGAGCTTATATCTTCCACAGATGCCT 171
|||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 121 CTATGCAGGAACGTTGTGAGAGTTTATGTTCTGATGAACTTATATCTTCCTCAGATGCCT 180
Query 172 TTTACCTCAAGACAAGAAAGCCTTATACCATTACTAAACAAAGAGAGAAATGGACAGAAG 231
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TTTACCTCAAGACAAGAAAGCCTTATACCATCACTAAACAAAGAGAGAAATGGACAGAAG 240
Query 232 CAGAGCATGAGAAGTTTGTAGAAGCTTTGAAACTCTATGGCAGAGCTTGGAGACGAATCG 291
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 CAGAGCATGAGAAGTTTGTAGAAGCATTGAAACTCTATGGCAGAGCTTGGAGACGAATCG 300
Query 292 AAGAACATGTTGGAACAAAGACCGCGGTTCAGATTCGAAGTCATGCTCAGAAGTT-TTTC 350
||||||||||||||||||| || || |||||||||||||| ||||| |||||||| |||
Sbjct 301 AAGAACATGTTGGAACAAAAACTGCAGTTCAGATTCGAAGCCATGCGCAGAAGTTCTTT- 359
Query 351 ACTAAGGTTGCTCGCGATTTTGGTGTTAGCTCTGAGTCCATTGAGATTCCGCCTCCACGG 410
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 360 ACTAAGGTTGCTCGCGATTTTGGTGTTAGCTCTGAGTCCATTGAGATCCCGCCTCCAAGG 419
Query 411 CCGAAA-AGAAAGCCGATGCATCCTTACCCTAGGAAGCTTGTGATTCCGGATGCAAAAGA 469
|| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 420 CC-AAAGAGAAAGCCGATGCATCCTTACCCTAGAAAGCTTGTGATTCCTGATGCAAAAGA 478
Query 470 GATGGCATATGTTGAACTAACCGGCTCCAAGATGGTTCAGGATGAAGATAACCGATCTCC 529
||||| ||| | |||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 479 GATGGTATACGCTGAACTAACCGGATCCAAGCTGATTCAGGATGAAGATAACCGATCTCC 538
Query 530 AACATCGGTTTTATCTGCTCATGGCTCAGATGGATTAGGTTCCATTGGTTCAAATTCACC 589
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AACATCGGTTTTATCAGCTCATGGCTCAGATGGATTAGGTTCCATTGGTTCAAATTCACC 598
Query 590 TAACTCTTCTTCAGCTGAGTTATCATCTCACACAGAGGAATCACTGTCTCCAGAAGCAGA 649
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 599 TAACTCTTCTTCAGCTGAGTTATCATCTCACACAGAGGAATCATTGTCTCTAGAAGCAGA 658
Query 650 GACCAAACAAAGCCTTAAACTCTTTGGAAAGACTTTTGTAGTTGGTGATTACAACTCTTC 709
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 659 GACCAAACAGAGCCTTAAGCTCTTTGGAAAAACTTTTGTAGTTGGTGATTACAACTCTTC 718
Query 710 AACAAGCTCTGATGATTCTGAAGATCTCAAGAAGAAGCTAGACTCAGAAACACAGTCTGT 769
|| || | |||||||||||||||| ||||||||||||| ||||||||||||||||| |
Sbjct 719 AATGAGTTGTGATGATTCTGAAGATGGCAAGAAGAAGCTATACTCAGAAACACAGTCTCT 778
Query 770 TCAATGTTCTTCTTGTACTTCGGAAAACGCTGAAACAGAAGTGACACGATTGGAAGTATC 829
|||||||||||||| |||||| ||||||||||||||||||||| | | | || ||
Sbjct 779 TCAATGTTCTTCTTCTACTTCAGAAAACGCTGAAACAGAAGTG----G-T---A-GTGTC 829
Query 830 GGAGTTTAAAAGAAGCGAGAGATCAGCTTTCTCTCAGTTGAAATCGACGGTGACTGAGAT 889
|||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 830 GGAGTTCAAAAGAAGTGAGAGATCAGCTTTCTCTCAGTTAAAATCGTCGGTGACTGAGAT 889
Query 890 GAACAACATGAGAGGGTTCATGCCTTACAAAAAGAGAGTAAAGGTGGAAGAAAACATTGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAACAACATGAGAGGGTTCATGCCTTACAAAAAGAGAGTAAAGGTGGAAGAAAACATTGA 949
Query 950 CAATGTAAAAATGTCATATCCTTTGTGGTG 979
|||||||||| | |||||||||||||||||
Sbjct 950 CAATGTAAAATTATCATATCCTTTGTGGTG 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5