BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493778
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42050.1 | Symbols: | DCD (Development and Cell Death) doma... 1969 0.0
> AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:16815489-16817301 FORWARD LENGTH=1560
Length=1560
Score = 1969 bits (1066), Expect = 0.0
Identities = 1264/1352 (93%), Gaps = 44/1352 (3%)
Strand=Plus/Plus
Query 1 ATAATTCTCACCCATTTTTCACCAATTTCTCT--GCTTaaaaccaaaccccaaatctcac 58
||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1 ATATTTCTCACCCATTTTTCACCAATTTCTCTCCACTTAAAACC-AACCCCAATTCTCAC 59
Query 59 aaaaaatcgcaaaaaaGCTTTCAACTTTCGATAATCTCAGATCGAAAAATCAGGTTTTTC 118
|||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||
Sbjct 60 CAAAAATCGCAAAAAAGATTTCAACTTTCGATAAACCCAGATCGAAAAATCAGATTTTTC 119
Query 119 CAGATCAATCAGAGA---AGAGATGGAGAATAATAACAACAATCAGCAATCTTTTTGGCA 175
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CAGATCAATCAGAGAGTTAGAGATGGAGTATAATAACAACAATCAGCAATCTTTTTGGCA 179
Query 176 GTTCAGCGACCAATTGAGAGTTCAGACACCAAATCTAGCGAATCTGTCTCTCAACGACTC 235
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GTTCAGCGACCAGCTGAGAGTTCAGACACCGAATCTAGCGAATCTGTCTCTCAACGACTC 239
Query 236 GATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTGGACATCGCCGCCACCGC 295
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 240 GATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTAGACATAGCCGCCACCAC 299
Query 296 CGACAAG---AACAACCAGATCGACTATTATCAGAAGAAGACAATTTCCGACAACATCAA 352
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 CGACAAGAACAACAACCAGATCGACTATTATCAGAAGAAGACAACTTCCGACAACATCAA 359
Query 353 TTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGTTTCGGACC 412
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 TTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGATTCGGACC 419
Query 413 CGTGGGATCAAAATCCACCGTCGATTTTAACCCAATCGACAAATTCAACACACCGTTCAA 472
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 420 TGTGGGTTCAAAATCCACCGTCGATTTAAACCCAATCGACAAATTCAACTCACCGTTCAA 479
Query 473 CGACACCTGGAAATTCAA--C--TC-A-G-T--C---AAC-G----T-----T-AA---- 505
|||||| ||||||||||| | || | | | | ||| | | | ||
Sbjct 480 CGACACGTGGAAATTCAACTCAGTCAACGTTAACGTTAACGGTTACTCACCGTCAAGCGC 539
Query 506 CGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAACAAGTATGGATACAACGT 565
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 540 CGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAAGAAGTATGGGTACAACGT 599
Query 566 GAATCTAAAGAACAACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAA 625
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAATCTAAAG---AACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAA 656
Query 626 AGGTGGGAAGAAGAACAGAAAGAATCATCAGAACAACAATAACCAGAGGAACGAAGACGA 685
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 657 AGGTGGGAAGAAGAACAGAAAGAATCAGCAGAACAATAATAACCAGAGGAACGAAGACGA 716
Query 686 CAAGAATAATGGTGTAGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAGGCGTTGCCAAG 745
|||||| |||||| | |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 717 CAAGAACAATGGTTTGGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAAGCTTTGCCAAG 776
Query 746 AAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAACCT 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 AAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAATCT 836
Query 806 CAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTGAGAGCGATAACTCC 865
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 CAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTTAGAGCGATAACTCC 896
Query 866 AGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAAGC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 AGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAGGC 956
Query 926 AGCTAGCTTCGGAGGAACCAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGG 985
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGG 1016
Query 986 CGAATCTCGTTTCCCTGCTCAGGTTAGGGCCATAACGAGGAAAGTGTGTTTGCCACTGGA 1045
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1017 CGAATCTCGTTTCCCTGCTCAGGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGA 1076
Query 1046 AGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGGCTCGAACT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 AGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGACTCGAACT 1136
Query 1106 CAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGG 1196
Query 1166 G-A-TACCAATGAAGAACACAAAAATAGTGGTTTGTTACTTGAAATCCAGAAAGAGAGAT 1223
| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1197 GTAATACCAATGAAGAACACAAAAC-AGTGGTTTGTTACTTCAAATCCAGAAAGAGAGAG 1255
Query 1224 ATACCCCCATTATACATATATGATTATAAGGAGGAGTATTAATAATAATTGTCTGAAGAA 1283
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATACCCC-ATTATACATATATGATTATAAGGAGGAGTATTAATAATAATTGTCTGAAGAA 1314
Query 1284 ATGGTATTTTTACTAGTTTATATAGttttttt 1315
|||||||||| ||||||||||| ||||| |||
Sbjct 1315 ATGGTATTTT-ACTAGTTTATACAGTTTCTTT 1345
Score = 226 bits (122), Expect = 5e-58
Identities = 156/171 (91%), Gaps = 7/171 (4%)
Strand=Plus/Plus
Query 1316 TAGAAGATGTGCTATTTTTGTGTGGGTGGATGAAGAATAGATCTCATCTCCACTTTGttt 1375
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1378 TAGAAGATGTGCTATTTTTGTGTGGGTGGATGAAGAATAGATCTCATCTCCGC---GCTT 1434
Query 1376 ttttttttttGTGTAAATTAAATAAAATAACATTTGTACAACCCCAAAA-TAGGGGGAAA 1434
|||| ||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1435 TTTTCTTTTTGT--AAATTATATAAAATAACATATGTACAACCCCAAAAATAGGGAGAAA 1492
Query 1435 ATGAGATGATGAACTCTTATCAATTTGTGTTTGATATTTGTATAATTGCTC 1485
|||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1493 -TGAGATGATGAACTCTTATCAATTTGTGTTTGATATTTTTATTATTGCTC 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5