BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493780
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42030.1 | Symbols: ABIL4 | ABL interactor-like protein 4 | ... 1565 0.0
> AT5G42030.1 | Symbols: ABIL4 | ABL interactor-like protein 4
| chr5:16811384-16813183 REVERSE LENGTH=1070
Length=1070
Score = 1565 bits (847), Expect = 0.0
Identities = 939/981 (96%), Gaps = 16/981 (2%)
Strand=Plus/Plus
Query 1 TGTGTGTATAGTGtctccacttggatctttcttacttactccattatcttcttctccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 20 TGTGTGTATAGTGTCTCCACTTGGATCTTTCTTACTTACTCCATTATCTTCTTCT-C-TC 77
Query 61 tctctctccctcatctcATTAATGGCGAGCTCTACATCTTTAGCGATAGTTCTTCATCAA 120
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCT-T-TCCCTCATCTCATTAATGGCGAGCTCTACATCTTTAGCGATAGTTCTTCATCAA 135
Query 121 TCTTCCAATCATGACGAACTCTTCATGAAGCAAACTCTTCAATTCTCAGAAACTCTCAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 136 TCTTCCAATCATGACGAACTCTTCATGAAGCAAACTCTTCAATTCTCAGAAACCCTCAAG 195
Query 181 GATTTAAAGAATCTGCGGAAACAGTTATACTCAGCAGCTGAGTACTTCGAAACATCTTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GATTTAAAGAATCTGCGGAAACAGTTATACTCAGCAGCTGAGTACTTCGAAACATCTTAT 255
Query 241 GGCAAAGAAGAACACAAAGAAACAGTGATAGAGACATTGAAAGAGTATGCAGCAAAGGCA 300
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 256 GGCAAAGCAGAACACAAAGAAACAGTGATAGAGACGTTGAAAGAGTATGCAGCAAAGGCA 315
Query 301 GTAGTGAACACAGTGGATCATCTTGGTTTTGTCTCTGACAAATTCAACTCTTTTCTCTCT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 316 GTAGTGAACACAGTGGATCATCTTGGTTCTGTCTCTGACAAATTCAACTCTTTTCTCTCT 375
Query 361 GATAACTCAACCCATTTCTCCACCACTCATCTCCGTTTATCTTCACTTGAACAAAGGATG 420
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 376 GATAACTCAACTCATTTCTCCACCACTCATCTTCGTTTATCTTCTCTTGAACAAAGGATG 435
Query 421 AGACTATGCAGAGATTACATGGGGAAGAGTGGGACTCATCAGCATTTGCTTCTATTTCAA 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 436 AGACTATGCAGAGATTACATGGGGAAGAGTGGCACTCATCAGCATTTGCTTCTATTTCAA 495
Query 481 TATCCTCGCCATCATAAGCGTTACTTCTTCCCTCAACAAGGAAGAGGCACAAGTTTCTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TATCCTCGCCATCATAAGCGTTACTTCTTCCCTCAACAAGGAAGAGGCACAAGTTTCTCT 555
Query 541 GCAGGAGATGACTCGCACCGGTTCAAGAGTGCTGTTCGAACAACAATACTAGAAAACCTC 600
|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 556 GCAGGAGATGACTCACACCGGTTCACGAGTGCTGTTCGATCAACAATACTAGAAAACCTC 615
Query 601 CCAAATACTGCAAGGAAAGCTAACAAGACAGGAAGCTTCTCTTTTGCACCCATCATACAC 660
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 616 CCAAATACTGCAAGGAAAGCTAACAAGACAGGAAGCTTCTCTTTTGCACCTATCGTACAC 675
Query 661 AACAACATCGACAACAGAACACCAAATAAAAGAACAAACTCTCCTATGAGATTCCCTCTC 720
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 676 AACAACATCAACAACAGAACACCAAATAAGAGATCAAACTCTCCTATGAGATTCCCTCTC 735
Query 721 TTACGTTCAGGATCTCTACTGAAACGTTCAAGCTCCCCAAGCCAACCAAAGAAACCGGTA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTACGTTCAGGATCTCTACTGAAACGTTCAAGCTCCCCAAGCCAACCAAAGAAACCGCCC 795
Query 781 TTACCCTTACCGGAACCTCAAAGAGCGATATCTGTGTCGAGAAATACAGAGATAGTGGAG 840
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 796 TTAGCGTTACCGGAACCTCAAAGAGCTATATCTGTGTCGAGAAATACAGAGATAGTGGAG 855
Query 841 ATAAAGCAATCTTCATCGCGAAAAGGGAAGAAGATTCTGATGCTCAAGGCATTGATGGGT 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 856 ATAAAGCAATCTTCATCGCGAAAAGGGAAGAAGATTCTGATGTTCAAGGCATTGATGAGT 915
Query 901 ATGAGCAAGTCCAGAAACTAAAATCTCTCC----A----AT----GACAAGATTTGTACA 948
||||||||||| |||||||||||||||||| | || || ||||||||||||
Sbjct 916 ATGAGCAAGTCGAGAAACTAAAATCTCTCCTTGTATTTGATAAATGAAAAGATTTGTACA 975
Query 949 AAACTAATGTGAAATAAGAGA 969
|||||||||||||||||||||
Sbjct 976 AAACTAATGTGAAATAAGAGA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5