BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493805 Length=1528 Score E Sequences producing significant alignments: (Bits) Value AT5G41800.1 | Symbols: | Transmembrane amino acid transporter ... 2453 0.0 > AT5G41800.1 | Symbols: | Transmembrane amino acid transporter family protein | chr5:16733773-16735991 FORWARD LENGTH=1531 Length=1531 Score = 2453 bits (1328), Expect = 0.0 Identities = 1466/1532 (96%), Gaps = 12/1532 (1%) Strand=Plus/Plus Query 1 TCATCATCATTCCATATATAAATCATTCACTTGCAGAATCTTCTTCTCTTTCACACT-AA 59 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 2 TCATCATCATTCCATATATAAATCATTCACTTGTAGAATCTTCTTCTCTTTCACACTAAA 61 Query 60 A-TCATCAATGACGGATCCTCCTAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 118 | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 62 ATTCATCGATGACGGATCCTCCCAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 121 Query 119 ACGCCGGAGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 178 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 ACGCCGGTGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 181 Query 179 TAACGACGGCGATTGTTGGTCCAACGATATTGACATTACCGTATGCGTTCAGAGGATTAG 238 |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct 182 TAACGACGGCGATTGTTGGTCCGACGATATTGACATTACCATATGCGTTTAGAGGATTAG 241 Query 239 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGTCTCGTTACTTTCTACGCTTATT 298 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 242 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGACTCGTTACTTTCTACGCTTATT 301 Query 299 ACCTCATGTCTAAAGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGGTTCC 358 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 302 ACCTCATGTCTAAGGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGTTTCC 361 Query 359 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATGGATGTTTTATGTAGTGATCTTTATTC 418 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 362 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATTGATGTTTTATGTAGTGATCTTTATTC 421 Query 419 AAACAGCTATCAACACTGGAATTGGTATTGGCGCTATTCTACTTGCAGGTCAATGTCTTG 478 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 422 AAACAGCTATCAACACTGGAATTGGTATTGGCGCCATTCTACTTGCAGGTCAATGTCTTG 481 Query 479 ATATAATGTACTCGAGTCTTTACCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 538 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 482 ATATAATGTATTCGAGTCTTTTCCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 541 Query 539 TGGTGACTGCTGTGATGATGGTTCTCTCACAGCTCCCAAGTTTTCACTCTCTTAGACACA 598 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 542 TGGTGACTGTTGTGATGATGGTTCTCTCACAGCTTCCAAGTTTTCACTCTCTTAGACACA 601 Query 599 TAAACTTTGCGTCTCTGATTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 658 | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 602 TTAACTGTGCGTCTCTGCTTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 661 Query 659 TTAACCTAGGTTTGTCTAAAAACGCTCCTAAACGCGACTATTCTTTGGAGCATTCGGATT 718 | |||||||||||||| ||||||||||||||||| || |||||| | ||||||||||||| Sbjct 662 TCAACCTAGGTTTGTCGAAAAACGCTCCTAAACGTGAGTATTCTCTAGAGCATTCGGATT 721 Query 719 CAGGGAAAGTTTTTAGTGCCTTCACATCGATTTCGATCATAGCTGCTATTTTCGGAAATG 778 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 722 CAGGGAAAGTTTTTAGTGCCTTCACATCAATTTCGATCATAGCTGCTATTTTCGGAAATG 781 Query 779 GAATCCTACCCGAAATACAGGCAACTCTTGCTCCACCAGCAACAGGGAAGATGTTGAAAG 838 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 782 GAATCTTACCCGAAATACAGGCAACTCTTGCTCCACCAGCCACAGGGAAGATGTTGAAAG 841 Query 839 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTC-GACTGCAATTTCGGGA 897 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 842 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTCTG-CTGCAATTTCGGGA 900 Query 898 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATTCTCAAGAACTTAATGCCTGATGAA 957 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 901 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATCCTCAAGAACTTAATGCCTGATGAA 960 Query 958 GGACCGACTTTGGCTCCTATCGTGGTGATTGGCTTAGCGGTCATCTTTGTCCTTCTTCAG 1017 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 961 GGACCGACTCTGGCTCCTATCGTGGTGATTGGCTTAGCTGTCATCTTTGTCCTTCTTCAG 1020 Query 1018 CTTTTCGCCATTGGCCTCGTGTATTCTCAAGTTGCATATGAGATAATGGAGAAGAAATCA 1077 ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1021 CTTTTCGCCATTGGCCTTGTGTATTCTCAAGTTGCGTATGAAATAATGGAGAAGAAATCA 1080 Query 1078 GCGGATACAACAAAAGGGATATTCTCAAGACGCAACCTTGTGCCCCGTTTGATACTAAGA 1137 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1081 GCGGATACAACAAAAGGGATATTCTCAAAACGCAACCTTGTGCCGCGTTTGATACTAAGA 1140 Query 1138 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGTGATATA 1197 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1141 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGGGATATA 1200 Query 1198 AACGCTGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTT 1257 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AACGCGGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTA 1260 Query 1258 TACAACATGACCTATAAGCCAACGAAACGGAGCTTCACATATTGGATAAACATGACGATA 1317 ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct 1261 TACAACATGACCTATAAGCCAACCAGACGGAGCTTCACGTATTGGATAAACATGACGATA 1320 Query 1318 ATGGTTGTGTTCACTTGTACGGGAGTCCTGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1377 |||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||| Sbjct 1321 ATGGTTGTGTTCACTTGTGCAGGACTCATGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1380 Query 1378 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTATGATA 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1381 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTTTGATA 1440 Query 1438 GTATGGTAAAA-CATAGACAACACTTGTTTTGTGGGttttttttACACTTGTACATGAAT 1496 || || ||||| |||| |||| ||||||||||||| || |||||||||||||||| Sbjct 1441 GTGTGATAAAAACATAAACAATACTTGTTTTGTGG-TT------ACACTTGTACATGAAT 1493 Query 1497 TTTTTGAGTCGATTCATTATCACACAAAATGC 1528 || | |||| |||||||||||||||||||||| Sbjct 1494 TTCTCGAGTTGATTCATTATCACACAAAATGC 1525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75401218590 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5